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Probing High-density Functional Protein Microarrays to Detect Protein-protein Interactions
Published on: August 2, 2015
Towards an understanding of C9orf82 protein/CAAP1 function
Muhammad Assad Aslam1, Mir Farshid Alemdehy1, Colin E J Pritchard2
1Division of Tumor Biology & Immunology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Abstract:
C9orf82 protein, or conserved anti-apoptotic protein 1 or caspase activity and apoptosis inhibitor 1 (CAAP1) has been implicated as a negative regulator of the intrinsic apoptosis pathway by modulating caspase expression and activity. In contrast, an independent genome wide screen for factors capable of driving drug resistance to the topoisomerase II (Topo II) poisons doxorubicin and etoposide, implicated a role for the nuclear protein C9orf82 in delaying DSBs repair downstream of Topo II, hereby sensitizing cells to DSB induced apoptosis. To determine its function in a genetically defined setting in vivo and ex vivo, we here employed CRISPR/Cas9 technology in zygotes to generate a C9orf82 knockout mouse model. C9orf82ko/ko mice were born at a Mendelian ratio and did not display any overt macroscopic or histological abnormalities. DSBs repair dependent processes like lymphocyte development and class switch recombination (CSR) appeared normal, arguing against a link between the C9orf82 encoded protein and V(D)J recombination or CSR. Most relevant, primary pre-B cell cultures and Tp53 transformed mouse embryo fibroblasts (MEFs) derived from C9orf82ko/ko E14.5 and wild type embryos displayed comparable sensitivity to a number of DNA lesions, including DSBs breaks induced by the topoisomerase II inhibitors, etoposide and doxorubicin. Likewise, the kinetics of γH2AX formation and resolution in response to etoposide of C9orf82 protein proficient, deficient and overexpressing MEFs were indistinguishable. These data argue against a direct role of C9orf82 protein in delaying repair of Topo II generated DSBs and regulating apoptosis. The genetically defined systems generated in this study will be of value to determine the actual function of C9orf82 protein.
Insights
The C9orf82 protein
Area of Science:
- Cellular biology
- Molecular genetics
- Apoptosis research
Background:
- C9orf82 protein (also known as CAAP1) has been linked to apoptosis regulation and drug resistance.
- Previous studies suggested C9orf82 delays DNA double-strand break (DSB) repair, sensitizing cells to apoptosis.
- Its precise function in vivo remained unclear.
Purpose of the Study:
- To investigate the in vivo and ex vivo function of C9orf82.
- To generate a C9orf82 knockout mouse model using CRISPR/Cas9 technology.
- To assess C9orf82's role in DNA repair and apoptosis.
Main Methods:
- CRISPR/Cas9 gene editing in mouse zygotes to create C9orf82 knockout (C9orf82ko/ko) mice.
- Phenotypic analysis of C9orf82ko/ko mice, including macroscopic, histological, and lymphocyte development assessments.
- Ex vivo studies using primary pre-B cell cultures and mouse embryo fibroblasts (MEFs) to evaluate sensitivity to DNA damage and repair kinetics (γH2AX focus formation).
Main Results:
- C9orf82ko/ko mice were viable and showed no overt abnormalities.
- Lymphocyte development and class switch recombination (CSR) were normal in C9orf82-deficient mice.
- C9orf82ko/ko and wild-type cells exhibited comparable sensitivity to DNA damaging agents (etoposide, doxorubicin) and similar DNA repair kinetics.
Conclusions:
- C9orf82 protein does not appear to play a significant role in delaying the repair of Topoisomerase II-induced DSBs.
- The study challenges the previously proposed function of C9orf82 in regulating apoptosis through modulation of DSB repair.
- The generated C9orf82 knockout models provide valuable tools for future research into the protein's actual function.
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