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Updated: Jan 30, 2026

Author Spotlight: A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data
Published on: December 1, 2023
Long noncoding RNA AK088388 regulates autophagy through miR-30a to affect cardiomyocyte injury
Jing-Jing Wang1,2, Zi-Dong Bie3, Chao-Feng Sun4
1Department of Medicine, Xi'an Jiaotong University, Xi'an, Shanxi, China.
Abstract:
Finding ways to reduce myocardial ischemia/reperfusion injury in the process of myocardial infarction has been an area of intense study in the field of heart disease. Recent studies have shown that long noncoding RNA (lncRNA) and autophagy play important roles in cardiovascular diseases. In our study, software analysis and dual-luciferase reporter assays have shown that miR-30a has binding sites on both AK088388 and Beclin-1. Continuing experiments found that miR-30a expression is downregulated, while the expressions of AK088388, Beclin-1, and LC3-II are upregulated in hypoxia/reoxygenation (H/R) cardiomyocytes; miR-30a inhibits the expression of AK088388, Beclin-1, and LC3-II in H/R cardiomyocytes, while AK088388 promotes the expression of Beclin-1 and LC3-II and inhibits miR-30a expression. AK088388 small interfering RNA and miR-30a mimics can promote the viability of H/R cardiomyocytes, reduce lactate dehydrogenase release, and reduce apoptosis. Mutations of the miR-30a binding site in AK088388 could not block the effects of miR-30a mentioned above. Therefore, AK088388 can competitively bind to miR-30a, promoting the expression of Beclin-1 and LC3-II, autophagy, and eventually cell damage. This finding provides new evidence for understanding the role of lncRNA in myocardial ischemia/reperfusion injury.
Insights
Long noncoding RNA (lncRNA) AK088388 exacerbates myocardial ischemia/reperfusion injury by competitively binding to miR-30a, promoting autophagy and cell damage. Inhibiting AK088388 or enhancing miR-30a protects cardiomyocytes.
Area of Science:
- Cardiovascular Biology
- Molecular Cardiology
- RNA Biology
Background:
- Myocardial ischemia/reperfusion (I/R) injury is a significant complication of myocardial infarction.
- Long noncoding RNAs (lncRNAs) and autophagy are implicated in cardiovascular disease pathogenesis.
- Understanding the molecular mechanisms underlying I/R injury is crucial for developing effective treatments.
Purpose of the Study:
- To investigate the role of the lncRNA AK088388 and microRNA miR-30a in myocardial I/R injury.
- To elucidate the molecular interaction between AK088388, miR-30a, and autophagy-related proteins.
- To evaluate the therapeutic potential of targeting the AK088388/miR-30a axis in protecting cardiomyocytes from I/R injury.
Main Methods:
- Bioinformatic analysis and dual-luciferase reporter assays to predict and validate binding sites.
- Quantitative real-time PCR to assess gene and microRNA expression levels.
- In vitro experiments using hypoxia/reoxygenation (H/R) treated cardiomyocytes, including cell viability assays, lactate dehydrogenase release assays, and apoptosis assays.
- RNA interference and mimic transfection to modulate gene and microRNA expression.
Main Results:
- miR-30a directly binds to both AK088388 and Beclin-1.
- miR-30a expression is downregulated, while AK088388, Beclin-1, and LC3-II expression is upregulated in H/R cardiomyocytes.
- AK088388 promotes Beclin-1 and LC3-II expression and autophagy, exacerbating H/R-induced cardiomyocyte damage.
- Inhibition of AK088388 or augmentation of miR-30a enhances cardiomyocyte viability and reduces apoptosis and LDH release.
Conclusions:
- AK088388 acts as a competing endogenous RNA (ceRNA) that sponges miR-30a, leading to increased autophagy and cell death in myocardial I/R injury.
- The AK088388/miR-30a axis represents a novel therapeutic target for mitigating myocardial I/R injury.
- Targeting this pathway offers a promising strategy for protecting the heart during ischemic events.
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