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Updated: Jan 30, 2026

In Vitro Analysis of E3 Ubiquitin Ligase Function
Published on: May 14, 2021
The circadian E3 ligase complex SCFFBXL3+CRY targets TLK2
Stephanie Papp Correia1, Alanna B Chan1, Megan Vaughan1
1Department of Molecular Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.
Abstract:
We recently demonstrated that the circadian clock component CRY2 is an essential cofactor in the SCFFBXL3-mediated ubiquitination of c-MYC. Because our demonstration that CRY2 recruits phosphorylated substrates to SCFFBXL3 was unexpected, we investigated the scope of this role by searching for additional substrates of FBXL3 that require CRY1 or CRY2 as cofactors. Here, we describe an affinity purification mass spectrometry (APMS) screen through which we identified more than one hundred potential substrates of SCFFBXL3+CRY1/2, including the cell cycle regulated Tousled-like kinase, TLK2. Both CRY1 and CRY2 recruit TLK2 to SCFFBXL3, and TLK2 kinase activity is required for this interaction. Overexpression or genetic deletion of CRY1 and/or CRY2 decreases or enhances TLK2 protein abundance, respectively. These findings reinforce the idea that CRYs function as co-factors for SCFFBXL3, provide a resource of potential substrates, and establish a molecular connection between the circadian and cell cycle oscillators via CRY-modulated turnover of TLK2.
Insights
Cryptochromes (CRY1/2) act as cofactors for SCFFBXL3, a protein complex that regulates c-MYC and TLK2. This study identifies new substrates and links circadian and cell cycle regulation.
Area of Science:
- Molecular Biology
- Chronobiology
- Cell Cycle Regulation
Background:
- The circadian clock protein CRY2 was identified as a cofactor for SCFFBXL3-mediated ubiquitination of c-MYC.
- CRY2's role in recruiting phosphorylated substrates to SCFFBXL3 was unexpected, prompting further investigation into its broader function.
Purpose of the Study:
- To investigate the scope of CRY1 and CRY2 as cofactors for SCFFBXL3 by identifying additional substrates.
- To establish a molecular link between the circadian and cell cycle regulatory systems.
Main Methods:
- Affinity purification mass spectrometry (APMS) screen to identify potential SCFFBXL3+CRY1/2 substrates.
- Analysis of TLK2 (Tousled-like kinase 2) interaction with SCFFBXL3 in the presence of CRY1/2.
Main Results:
- Over one hundred potential SCFFBXL3+CRY1/2 substrates were identified, including TLK2.
- Both CRY1 and CRY2 recruit TLK2 to SCFFBXL3, dependent on TLK2 kinase activity.
- CRY1/2 overexpression or deletion modulated TLK2 protein abundance, indicating CRY-dependent regulation.
Conclusions:
- CRYs serve as essential cofactors for SCFFBXL3, expanding the known substrates of this complex.
- A molecular connection is established between circadian and cell cycle oscillators through CRY-modulated TLK2 turnover.
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