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Updated: Jan 30, 2026

Author Spotlight: A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data
Published on: December 1, 2023
Downregulation of long noncoding RNA FENDRR predicts poor prognosis in renal cell carcinoma
Wang He1,2, Guangzheng Zhong1,2, Pei Wang3
1Department of Urology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, Guangdong 510120, P.R. China.
Abstract:
Long noncoding RNA FOXF1 adjacent non-coding developmental regulatory RNA (FENDRR) dysregulation associates with multiple types of human cancer. However, the biological functions of FENDRR in renal cell carcinoma are unresolved. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was performed to determine the expression level of FENDRR in renal cell carcinoma tissues. An RNA interference assay and ectopic expression experiments were conducted to evaluate the effects of FENDRR on cell proliferation, migration, invasion and colony formation in vitro. RNA immunoprecipitation was conducted to identify proteins associated with FENDRR. It was observed that FENDRR is frequently downregulated in renal cell carcinoma and overexpression of FENDRR attenuated proliferation, migration, invasion and colony growth of renal carcinoma cells. Conversely, knockdown of FENDRR promotes proliferation and invasiveness of renal carcinoma cells. Downregulation of FENDRR associates with poor prognosis of renal cell carcinoma. Mechanistically, it was identified that FENDRR may bind to Polycomb Repressive Complex 2 and lysin methyltransferase 2A histone modifying complexes. In summary, FENDRR acts as an tumor suppressor in renal cell carcinoma and may serve as a candidate target for gene therapy.
Insights
Long noncoding RNA FOXF1 adjacent non-coding developmental regulatory RNA (FENDRR) is downregulated in renal cell carcinoma, acting as a tumor suppressor. Its restoration inhibits cancer cell growth and invasion, suggesting FENDRR as a therapeutic target.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Dysregulation of long noncoding RNA FOXF1 adjacent non-coding developmental regulatory RNA (FENDRR) is linked to various human cancers.
- The specific role of FENDRR in renal cell carcinoma (RCC) remains largely unknown.
Purpose of the Study:
- To investigate the expression patterns and functional significance of FENDRR in renal cell carcinoma.
- To elucidate the underlying molecular mechanisms of FENDRR's action in RCC progression.
Main Methods:
- Quantitative reverse transcription-polymerase chain reaction (RT-qPCR) for FENDRR expression analysis.
- RNA interference and ectopic expression assays to assess FENDRR's impact on cell proliferation, migration, and invasion.
- RNA immunoprecipitation (RIP) to identify FENDRR-interacting proteins.
Main Results:
- FENDRR is significantly downregulated in renal cell carcinoma tissues compared to normal tissues.
- Overexpression of FENDRR suppressed proliferation, migration, invasion, and colony formation of RCC cells.
- Knockdown of FENDRR enhanced proliferation and invasiveness of RCC cells.
- Lower FENDRR expression correlated with poorer prognosis in RCC patients.
- FENDRR was found to interact with Polycomb Repressive Complex 2 and lysin methyltransferase 2A histone modifying complexes.
Conclusions:
- FENDRR functions as a tumor suppressor in renal cell carcinoma.
- FENDRR's downregulation is associated with adverse clinical outcomes in RCC.
- FENDRR represents a potential therapeutic target for gene therapy in renal cell carcinoma.
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