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Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples
Marc Streit1,2, Samuel Gratzl1,2, Holger Stitz1
1Institute of Computer Graphics, Johannes Kepler University Linz, Linz A-4040, Austria.
Summary:
Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.
Availability And Implementation:
Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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