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Cink4T, a quinazolinone-based dual inhibitor of Cdk4 and tubulin polymerization, identified via ligand-based virtual
Vinay Sonawane1, Mohd Usman Mohd Siddique2, Surender Singh Jadav3
1Leicester School of Pharmacy, De Montfort University, Leicester, LE1 9BH, UK.
Abstract:
Inhibition of cyclin dependent kinase 4 (Cdk4) prevents cancer cells from entering the early G0/G1 phase of the cell division cycle whereas inhibiting tubulin polymerization blocks cancer cells' ability to undergo mitosis (M) late in the cell cycle. We had reported earlier that two non-planar and relatively non-toxic fascaplysin derivatives, an indole and a tryptoline, inhibit Cdk4 with IC50 values of 6.2 and 10 μM, respectively. Serendipitously, we had also found that they inhibited tubulin polymerization. The molecules were efficacious in mouse tumor models. We have now identified Cink4T in a 59-compound quinazolinone library, designed on the basis of ligand-based virtual screening, as a compound that inhibits Cdk4 and tubulin. Its IC50 value for Cdk4 inhibition is 0.47 μM and >50 μM for inhibition of Cdk1, Cdk2, Cdk6, Cdk9. Cink4T inhibits tubulin polymerization with an IC50 of 0.6 μM. Molecular modelling studies on Cink4T with Cdk4 and tubulin crystal structures lend support to these observations. Cancer cell cycle analyses confirm that Cink4T blocks cells at both G0/G1 and M phases as it should if it were to inhibit both Cdk4 and tubulin polymerization. Our results show, for the very first time, that virtual screening can be used to design novel inhibitors that can potently block two crucial phases of the cell division cycle.
Insights
Novel compounds targeting both Cdk4 and tubulin polymerization offer a new strategy for cancer therapy by blocking cell division at multiple stages. This research demonstrates virtual screening
Area of Science:
- * Pharmacology and Medicinal Chemistry
- * Cancer Biology
- * Molecular Biology
Background:
- * Targeting cell cycle regulators like cyclin-dependent kinase 4 (Cdk4) and tubulin polymerization are established strategies to inhibit cancer cell proliferation.
- * Previous research identified fascaplysin derivatives as dual inhibitors of Cdk4 and tubulin, showing efficacy in preclinical models.
- * Developing novel, potent inhibitors with dual-targeting capabilities remains a key objective in cancer drug discovery.
Purpose of the Study:
- * To identify novel compounds that inhibit both Cdk4 and tubulin polymerization.
- * To evaluate the efficacy of identified compounds in blocking cancer cell cycle progression at critical phases (G0/G1 and M).
- * To demonstrate the utility of ligand-based virtual screening in designing multi-target inhibitors for cancer treatment.
Main Methods:
- * Screening of a 59-compound quinazolinone library using ligand-based virtual screening.
- * Biochemical assays to determine IC50 values for Cdk4 and tubulin polymerization inhibition.
- * Cancer cell cycle analysis and molecular modeling studies with Cdk4 and tubulin crystal structures.
Main Results:
- * Identification of Cink4T, a quinazolinone derivative, as a potent inhibitor of Cdk4 (IC50 = 0.47 μM) and tubulin polymerization (IC50 = 0.6 μM).
- * Cink4T demonstrated high selectivity for Cdk4 over other cyclin-dependent kinases (Cdk1, Cdk2, Cdk6, Cdk9).
- * Cell cycle analysis confirmed Cink4T's ability to arrest cancer cells in both G0/G1 and M phases, consistent with dual inhibition.
Conclusions:
- * Virtual screening is an effective strategy for designing novel small molecules with dual inhibitory activity against key cancer targets.
- * Cink4T represents a promising lead compound for cancer therapy due to its potent dual inhibition of Cdk4 and tubulin.
- * Targeting multiple cell cycle phases simultaneously offers a robust approach to overcome resistance and enhance therapeutic outcomes in cancer treatment.
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