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Updated: Jan 30, 2026

In Vitro Selection of Aptamers to Differentiate Infectious from Non-Infectious Viruses
Published on: September 7, 2022
Structural features distinguishing infectious ex vivo mammalian prions from non-infectious fibrillar assemblies
Cassandra Terry1,2, Robert L Harniman3, Jessica Sells1,4
1MRC Prion Unit at UCL, UCL Institute of Prion Diseases, 33 Cleveland Street, London, W1W 7FF, UK.
Abstract:
Seeded polymerisation of proteins forming amyloid fibres and their spread in tissues has been implicated in the pathogenesis of multiple neurodegenerative diseases: so called "prion-like" mechanisms. While ex vivo mammalian prions, composed of multichain assemblies of misfolded host-encoded prion protein (PrP), act as lethal infectious agents, PrP amyloid fibrils produced in vitro generally do not. The high-resolution structure of authentic infectious prions and the structural basis of prion strain diversity remain unknown. Here we use cryo-electron microscopy and atomic force microscopy to examine the structure of highly infectious PrP rods isolated from mouse brain in comparison to non-infectious recombinant PrP fibrils generated in vitro. Non-infectious recombinant PrP fibrils are 10 nm wide single fibres, with a double helical repeating substructure displaying small variations in adhesive force interactions across their width. In contrast, infectious PrP rods are 20 nm wide and contain two fibres, each with a double helical repeating substructure, separated by a central gap of 8-10 nm in width. This gap contains an irregularly structured material whose adhesive force properties are strikingly different to that of the fibres, suggestive of a distinct composition. The structure of the infectious PrP rods, which cause lethal neurodegeneration, readily differentiates them from all other protein assemblies so far characterised in other neurodegenerative diseases.
Insights
The structural difference between infectious prion protein (PrP) rods and non-infectious PrP fibrils was revealed. Infectious PrP rods are wider and contain a unique central gap, explaining their distinct properties in neurodegenerative diseases.
Area of Science:
- Structural Biology
- Neuroscience
- Biochemistry
Background:
- Protein misfolding and aggregation into amyloid fibrils are implicated in neurodegenerative diseases.
- Prion-like mechanisms, involving the spread of misfolded proteins, are key in diseases like Creutzfeldt-Jakob disease.
- While in vitro recombinant prion protein (PrP) fibrils are generally non-infectious, authentic mammalian prions are lethal agents, but their high-resolution structures remain elusive.
Purpose of the Study:
- To elucidate the high-resolution structure of infectious prion protein (PrP) rods from mouse brain.
- To compare the structure of infectious PrP rods with non-infectious recombinant PrP fibrils generated in vitro.
- To understand the structural basis for the infectivity and pathogenicity of prions.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was employed to examine the structure of PrP assemblies.
- Atomic force microscopy (AFM) was used to probe the physical properties and adhesive forces of the fibrils.
- Comparative structural analysis was performed on infectious PrP rods and in vitro recombinant PrP fibrils.
Main Results:
- Non-infectious recombinant PrP fibrils are 10 nm wide single fibers with a double helical substructure.
- Infectious PrP rods are 20 nm wide, composed of two parallel fibers separated by an 8-10 nm gap.
- The central gap in infectious PrP rods contains irregularly structured material with distinct adhesive properties, differentiating them from non-infectious fibrils.
Conclusions:
- The distinct 3D structure of infectious PrP rods, particularly the central gap region, differentiates them from non-infectious PrP fibrils.
- These structural differences are likely responsible for the distinct biological activities and pathogenicity of authentic prions.
- The findings provide a structural basis for understanding prion strain diversity and the mechanisms of prion-induced neurodegeneration.
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