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Formaldehyde-assisted Isolation of Regulatory Elements to Measure Chromatin Accessibility in Mammalian Cells
Published on: April 2, 2018
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Chromatin accessibility and the regulatory epigenome.
Sandy L Klemm1, Zohar Shipony1, William J Greenleaf2,3,4
1Department of Genetics, Stanford University, Stanford, CA, USA.
Nature Reviews. Genetics
|January 25, 2019
Summary
Chromatin accessibility, crucial for cellular identity, dynamically regulates gene expression. Transcription factors remodel accessible DNA, defining regulatory elements and controlling gene activity.
Area of Science:
- Molecular Biology
- Epigenetics
- Genomics
Background:
- Physical DNA accessibility in chromatin is vital for cellular identity.
- Accessible chromatin organizes genome-wide interactions regulating gene expression.
- Dynamic regulation of chromatin accessibility is essential for development and response to stimuli.
Purpose of the Study:
- To review methods for measuring accessible genomes.
- To explore the role of transcription factors in chromatin remodeling.
- To illustrate how chromatin accessibility defines regulatory elements and controls gene expression.
Main Methods:
- Review of existing literature on chromatin accessibility measurement techniques.
- Analysis of studies investigating transcription factor roles in chromatin remodeling.
- Synthesis of evidence on the dynamic establishment of epigenetic features.
Main Results:
- Chromatin accessibility is a dynamic property essential for cellular identity.
- Transcription factors initiate accessibility remodeling, influencing gene expression.
- Epigenetic features of chromatin accessibility dynamically control gene expression.
Conclusions:
- Understanding chromatin accessibility is key to deciphering gene regulation.
- Dynamic remodeling of accessible chromatin by transcription factors is fundamental.
- Chromatin accessibility serves as a critical layer of epigenetic control over gene expression.
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