Cellular determinants of metabolite concentration ranges
Anika Küken1,2, Jeanne M O Eloundou-Mbebi1,2, Georg Basler1
1System Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Abstract:
Cellular functions are shaped by reaction networks whose dynamics are determined by the concentrations of underlying components. However, cellular mechanisms ensuring that a component's concentration resides in a given range remain elusive. We present network properties which suffice to identify components whose concentration ranges can be efficiently computed in mass-action metabolic networks. We show that the derived ranges are in excellent agreement with simulations from a detailed kinetic metabolic model of Escherichia coli. We demonstrate that the approach can be used with genome-scale metabolic models to arrive at predictions concordant with measurements from Escherichia coli under different growth scenarios. By application to 14 genome-scale metabolic models from diverse species, our approach specifies the cellular determinants of concentration ranges that can be effectively employed to make predictions for a variety of biotechnological and medical applications.
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