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Accounting for preferential sampling in species distribution models.

Maria Grazia Pennino1, Iosu Paradinas2,3, Janine B Illian4

  • 1Instituto Español de Oceanografía Centro Oceanográfico de Vigo Vigo Spain.

Ecology and Evolution
|January 26, 2019
PubMed
Summary
This summary is machine-generated.

Preferential sampling in species distribution models (SDMs) can cause biased abundance estimates. This study introduces a computationally efficient Bayesian SDM using integrated nested Laplace approximation (INLA) to correct for this bias.

Keywords:
Bayesian modellingintegrated nested Laplace approximationpoint processesspecies distribution modelsstochastic partial differential equation

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Area of Science:

  • Ecology
  • Spatial Statistics
  • Conservation Biology

Background:

  • Species distribution models (SDMs) are crucial for ecological management and conservation.
  • Standard geostatistical models assume sampling locations are independent of species presence, an assumption often violated in practice.
  • Opportunistic sampling leads to preferential sampling, biasing distribution predictions.

Purpose of the Study:

  • To address bias in SDMs caused by preferential sampling.
  • To present a computationally efficient alternative to existing Markov Chain Monte Carlo (MCMC) methods.
  • To improve the accuracy of species distribution predictions.

Main Methods:

  • Interpreting data as a marked point pattern.
  • Employing a Bayesian approach for inference and prediction.
  • Utilizing Integrated Nested Laplace Approximation (INLA) for efficient model fitting.

Main Results:

  • Unaccounted preferential sampling significantly overestimates species abundance at low-density locations.
  • The proposed model effectively corrects for bias in both simulated and real-world fishery data.
  • Demonstrated the impact of non-randomized sampling on ecological predictions.

Conclusions:

  • Ecologists must recognize and account for preferential sampling bias in SDMs.
  • The developed INLA-based Bayesian SDM offers a computationally efficient solution.
  • Accurate species distribution modeling requires addressing non-systematic sampling strategies.