Amide nitrogen pyramidalization changes lactam amide spinning.

Yuko Otani1, Xin Liu2, Hisashi Ohno2

  • 1Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan. otani@mol.f.u-tokyo.ac.jp.

Nature Communications
|January 30, 2019
PubMed
Summary

This study explores how lactam amides rotate and change between cis and trans forms based on chain length. Using two bicyclic units connected by a non-planar amide bond, researchers found that longer chains slow down the rotation rate from trans to cis, increasing the trans ratio. They also observed that nitrogen pyramidalization allows lactam amides to spin fully, like open-chain amides. The tilting of the amide nitrogen atom is synchronized with rotation, suggesting a coordinated mechanism. These findings help explain how structural changes influence lactam amide dynamics and may inform future research on conformational behavior.

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