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Protein informatics combined with multiple data sources enriches the clinical characterization of novel TRPV4 variant
Stephanie L Hines1,2,3, John E Richter1, Ahmed N Mohammad1
1Department of Clinical Genomics, Mayo Clinic, Jacksonville, Florida.
Background:
Transient receptor potential cation channel subfamily V member 4 (TRPV4) is an ion channel permeable to Ca2+ that is sensitive to physical, hormonal, and chemical stimuli. This protein is expressed in many cell types, including osteoclasts, chondrocytes, and sensory neurons. As such, pathogenic variants of this gene are associated with skeletal dysplasias and neuromuscular disorders. Pathogenesis of these phenotypes is not yet completely understood, but it is known that genotype-phenotype correlations for TRPV4 pathogenic variants often are not present.
Methods:
Newly characterized, suspected pathogenic variant in TRPV4 was analyzed using protein informatics and personalized protein-level molecular studies, genomic exome analysis, and clinical study.
Results:
This statement is demonstrated in the family of our proband, a 47-year-old female having the novel c.2401A>G (p.K801E) variant of TRPV4. We discuss the common symptoms between the proband, her father, and her daughter, and compare her phenotype to known TRPV4-associated skeletal dysplasias.
Conclusions:
Protein informatics and molecular modeling are used to confirm the pathogenicity of the unique TRPV4 variant found in this family. Multiple data were combined in a comprehensive manner to give complete overall perspective on the patient disease and prognosis.
Insights
A novel TRPV4 gene variant (c.2401A>G) was identified in a family with skeletal dysplasia. Molecular studies confirmed its pathogenicity, highlighting complex genotype-phenotype correlations in TRPV4-related disorders.
Area of Science:
- Genetics and Molecular Biology
- Biophysics
- Clinical Medicine
Background:
- Transient receptor potential cation channel subfamily V member 4 (TRPV4) is a Ca2+-permeable ion channel activated by various stimuli.
- Pathogenic variants in TRPV4 are linked to skeletal dysplasias and neuromuscular disorders, but genotype-phenotype correlations are often unclear.
- TRPV4 is expressed in osteoclasts, chondrocytes, and sensory neurons, indicating its diverse physiological roles.
Observation:
- A novel TRPV4 variant, c.2401A>G (p.K801E), was identified in a proband and her family members.
- The proband, her father, and her daughter presented with overlapping symptoms consistent with TRPV4-associated skeletal dysplasia.
- Genomic exome analysis and clinical studies were performed to investigate the variant's impact.
Findings:
- Protein informatics and molecular modeling confirmed the pathogenicity of the novel c.2401A>G TRPV4 variant.
- The identified variant demonstrated complex genotype-phenotype correlations within the affected family.
- Comparative analysis of the proband's phenotype with known TRPV4-associated skeletal dysplasias was conducted.
Implications:
- This study provides a comprehensive perspective on the disease and prognosis associated with the unique TRPV4 variant.
- Understanding the pathogenicity of novel TRPV4 variants is crucial for accurate diagnosis and genetic counseling.
- Further research into TRPV4 variants can elucidate the pathogenesis of skeletal dysplasias and neuromuscular disorders.
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