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Updated: Jan 30, 2026

Simultaneous Measurement of HDAC1 and HDAC6 Activity in HeLa Cells Using UHPLC-MS
Published on: August 10, 2017
Selective pharmacological inhibitors of HDAC6 reveal biochemical activity but functional tolerance in cancer models
Yves Depetter1,2,3, Silke Geurs1, Rob De Vreese1
1SynBioC Research Group, Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.
Abstract:
Our study investigates the biochemical and functional impact of selective histone deacetylase 6 (HDAC6) inhibitors, a promising class of novel therapeutics, in several cancer models. Selective HDAC6 inhibitors (Tubathian A, Tubastatin A, Tubacin and Ricolinostat) and a non-selective HDAC inhibitor (Vorinostat) were evaluated on cancer cell lines derived from multiple tumour types in both an in vitro and in vivo setting as potential cancer therapeutics. Selective HDAC6 inhibitors resulted in α-tubulin acetylation with no impact on histone acetylation but failed to show any anti-cancer properties. Only the use of high concentrations of selective HDAC6 inhibitors resulted in co-inhibition of other HDAC enzymes and consequently in reduced growth, migratory and/or invasive activity of cancer cells in vitro as well as in vivo. The specificity of HDAC6 inhibition was confirmed using a CRISPR/Cas9 knockout cell line. Our results suggest that selective HDAC6 inhibitors may fall short as potential single agent anti-cancer drugs and prove that many previous data regarding this promising class of compounds need to be interpreted with great care due to their use in high concentrations resulting in low selectivity and potential off-target effects.
Insights
Selective histone deacetylase 6 (HDAC6) inhibitors show limited anti-cancer effects alone. High concentrations cause off-target effects, suggesting caution in interpreting previous HDAC6 inhibitor research.
Area of Science:
- Biochemistry
- Oncology
- Pharmacology
Background:
- Histone deacetylase 6 (HDAC6) inhibitors are investigated as novel cancer therapeutics.
- Selective HDAC6 inhibition targets α-tubulin acetylation.
Purpose of the Study:
- To evaluate the biochemical and functional impact of selective HDAC6 inhibitors in cancer models.
- To assess the anti-cancer properties of selective HDAC6 inhibitors versus non-selective inhibitors.
Main Methods:
- In vitro and in vivo studies using multiple cancer cell lines.
- Evaluation of selective HDAC6 inhibitors (Tubathian A, Tubastatin A, Tubacin, Ricolinostat) and Vorinostat.
- Confirmation of specificity using CRISPR/Cas9 knockout cell lines.
Main Results:
- Selective HDAC6 inhibitors acetylated α-tubulin but did not impact histone acetylation.
- Selective HDAC6 inhibitors showed minimal anti-cancer activity at low concentrations.
- High concentrations led to co-inhibition of other HDACs, reducing cancer cell growth and invasion.
- Specificity was confirmed via CRISPR/Cas9 knockout.
Conclusions:
- Selective HDAC6 inhibitors may not be effective as single-agent cancer drugs.
- Previous studies using high concentrations require careful interpretation due to lack of selectivity and off-target effects.
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