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Updated: Jan 30, 2026

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
Plasma Proteome Signature of Sepsis: a Functionally Connected Protein Network
Genaro Pimienta1, Douglas M Heithoff2,3, Alexandre Rosa-Campos4
1Cancer Metabolism and Signaling Networks Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, 9207, USA.
Researchers identified a Plasma Proteome Signature of Sepsis (PPSS) in mouse models. This molecular signature could improve sepsis diagnosis and guide new therapeutic strategies for this life-threatening condition.
Area of Science:
- Proteomics
- Systems Biology
- Infectious Disease Research
Background:
- Sepsis is a life-threatening condition characterized by organ dysfunction and cardiovascular compromise.
- Rising mortality rates highlight the urgent need for improved sepsis diagnostics and therapeutics.
- Current diagnostic approaches rely on clinical symptoms, often leading to delayed treatment.
Purpose of the Study:
- To investigate the plasma proteome in mouse models of sepsis using quantitative proteomics.
- To identify a molecular signature for sepsis diagnosis and understanding disease progression.
- To establish a basis for developing novel sepsis diagnostic and therapeutic strategies.
Main Methods:
- Utilized label-free quantification (LFQ) and tandem mass tag (TMT)-based quantitative proteomics.
- Analyzed plasma samples from five distinct mouse models of sepsis.
- Applied knowledge-based interpretation to identify protein-protein interactions and functional networks.
Main Results:
- Identified a highly interconnected protein network in the plasma of septic mice.
- Confirmed that proteins within this network have documented roles in sepsis and are extracellular.
- Observed protein abundance changes consistent with human sepsis literature, establishing the Plasma Proteome Signature of Sepsis (PPSS).
Conclusions:
- The Plasma Proteome Signature of Sepsis (PPSS) offers a quantifiable molecular readout for sepsis.
- PPSS has the potential to replace current symptom-based diagnostic methods.
- This molecular approach advances understanding of sepsis, aiding in the discovery and evaluation of new therapies.
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