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Updated: Jan 30, 2026

Visualizing Mitophagy with Fluorescent Dyes for Mitochondria and Lysosome
Published on: November 30, 2022
VPS13A is closely associated with mitochondria and is required for efficient lysosomal degradation
Sandra Muñoz-Braceras1, Alba R Tornero-Écija1, Olivier Vincent1
1Instituto de Investigaciones Biomédicas Alberto Sols, Department of Experimental Models of Human Diseases, Consejo Superior de Investigaciones Científicas (CSIC)/Universidad Autónoma Madrid (UAM), 28029-Madrid, Spain.
Abstract:
Members of the VPS13 family are associated with various human diseases. In particular, the loss of function of VPS13A leads to chorea-acanthocytosis (ChAc), a rare neurodegenerative disease without available curative treatments. Autophagy has been considered a promising therapeutic target because the absence of VPS13A causes a defective autophagy flux. However, the mechanistic details of this deficiency are unknown. Here, we identified Rab7A as an interactor of one of the VPS13 family members in Dictyostelium discoideum and showed that this interaction is conserved between the human homologs VPS13A and RAB7A in HeLa cells. As RAB7A is a key player in endosome trafficking, we addressed the possible function of VPS13A in endosome dynamics and lysosome degradation. Our results suggest that the decrease in autophagy observed in the absence of VPS13A may be the result of a more general defect in endocytic trafficking and lysosomal degradation. Unexpectedly, we found that VPS13A is closely localized to mitochondria, suggesting that the role of VPS13A in the endolysosomal pathway might be related to inter-organelle communication. We show that VPS13A localizes at the interface between mitochondria-endosomes and mitochondria-endoplasmic reticulum and that the presence of membrane contact sites is altered in the absence of VPS13A. Based on these findings, we propose that therapeutic strategies aimed at modulating the endolysosomal pathway could be beneficial in the treatment of ChAc.This article has an associated First Person interview with the first author of the paper.
Insights
VPS13A protein deficiency impairs endosomal trafficking and lysosomal degradation, potentially linked to mitochondrial interactions. Modulating these pathways may offer new treatments for chorea-acanthocytosis (ChAc).
Area of Science:
- Cell Biology
- Neuroscience
- Human Genetics
Background:
- VPS13A protein dysfunction causes chorea-acanthocytosis (ChAc), a neurodegenerative disorder.
- Defective autophagy flux is observed in ChAc, but the underlying mechanisms remain unclear.
- VPS13A family members are implicated in various human diseases.
Purpose of the Study:
- Investigate the function of VPS13A in endosome trafficking and lysosomal degradation.
- Elucidate the mechanistic link between VPS13A deficiency and impaired autophagy.
- Explore the potential role of VPS13A in inter-organelle communication, particularly with mitochondria.
Main Methods:
- Identified VPS13A and RAB7A interaction in Dictyostelium discoideum and conserved in human HeLa cells.
- Assessed VPS13A's role in endocytic trafficking and lysosomal degradation.
- Examined VPS13A localization at mitochondria-associated membrane contact sites (MCS) with endosomes and endoplasmic reticulum.
Main Results:
- VPS13A interacts with RAB7A, a key regulator of endosome trafficking.
- VPS13A deficiency leads to general defects in endocytic trafficking and lysosomal degradation, contributing to reduced autophagy.
- VPS13A localizes to mitochondria-endosome and mitochondria-ER interfaces, and its absence alters MCS.
- Altered membrane contact sites suggest VPS13A's role in inter-organelle communication.
Conclusions:
- VPS13A deficiency causes broader endolysosomal trafficking defects, not just autophagy impairment.
- VPS13A's function at mitochondria-associated membrane contact sites is crucial for cellular homeostasis.
- Targeting the endolysosomal pathway and inter-organelle communication presents a potential therapeutic strategy for ChAc.
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