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Updated: Jan 29, 2026

ATAC-Seq Optimization for Cancer Epigenetics Research
Published on: June 30, 2022
Cancer epigenetics in solid organ tumours: A primer for surgical oncologists
Thomas M Drake1, Kjetil Søreide2
1Department of Clinical Surgery, Royal Infirmary of Edinburgh, University of Edinburgh, Edinburgh, UK.
Abstract:
Cancer is initiated through both genetic and epigenetic alterations. The end-effect of such changes to the DNA machinery is a set of uncontrolled mechanisms of cell division, invasion and, eventually, metastasis. Epigenetic changes are now increasingly appreciated as an essential driver to the cancer phenotype. The epigenetic regulation of cancer is complex and not yet fully understood, but application of epigenetics to clinical practice and in cancer research has the potential to improve cancer care. Epigenetics changes do not cause changes in the DNA base-pairs (and, hence, does not alter the genetic code per se) but rather occur through methylation of DNA, by histone modifications, and, through changes to chromatin structure to alter genetic expression. Epigenetic regulators are characterized as writers, readers or erasers by their mechanisms of action. The human epigenome is influenced from cradle to grave, with internal and external life-time exposure influencing the epigenetic marks that may act as modifiers or drivers of carcinogenesis. Preventive and public health strategies may follow from better understanding of the life-time influence of the epigenome. Epigenetics may be used to define risk, to investigate mechanisms of carcinogenesis, to identify biomarkers, and to identify novel therapeutic options. Epigenetic alterations are found across many solid cancers and are increasingly making clinical impact to cancer management. Novel epigenetic drugs may be used for a more tailored and specific response to treatment of cancers. We present a primer on epigenetics for surgical oncologists with examples from colorectal cancer, breast cancer, pancreatic cancer and hepatocellular carcinoma.
Insights
Epigenetic alterations, not DNA sequence changes, drive cancer development. Understanding epigenetics offers new avenues for cancer risk assessment, biomarker discovery, and targeted therapies.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Cancer arises from genetic and epigenetic changes leading to uncontrolled cell growth and metastasis.
- Epigenetic modifications, such as DNA methylation and histone alterations, regulate gene expression without changing DNA sequence.
- The human epigenome is dynamic, influenced by lifetime exposures, and plays a critical role in carcinogenesis.
Purpose of the Study:
- To provide a foundational understanding of epigenetics for surgical oncologists.
- To highlight the role of epigenetic alterations in various cancers.
- To explore the potential of epigenetics in cancer management and therapy.
Main Methods:
- Review of current literature on epigenetics in cancer.
- Explanation of epigenetic mechanisms (DNA methylation, histone modification, chromatin remodeling).
- Discussion of epigenetic regulators (writers, readers, erasers).
Main Results:
- Epigenetic alterations are key drivers of cancer phenotype across many solid tumors.
- Epigenetic marks are influenced by internal and external factors throughout life.
- Epigenetics offers potential for defining cancer risk, understanding carcinogenesis, and identifying biomarkers.
Conclusions:
- Epigenetics is crucial for cancer development and progression.
- Understanding epigenetics can lead to improved cancer prevention and treatment strategies.
- Novel epigenetic drugs hold promise for personalized cancer therapy, with examples in colorectal, breast, pancreatic, and hepatocellular cancers.
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