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An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
Published on: November 3, 2010
Reference Expression Profile of Three FBN1 Transcript Isoforms and Their Association with Clinical Variability in
Louise Benarroch1, Mélodie Aubart2,3, Marie-Sylvie Gross4
1Laboratory for Vascular Translational Science, INSERM U1148, Centre Hospitalo-Universitaire Xavier Bichat, 46 rue Henri Huchard, 75018 Paris, France. louise.benarroch@inserm.fr.
Abstract:
Marfan syndrome (MFS) is a rare connective tissue disorder mainly due to mutations in the FBN1 gene. Great phenotypic variability is notable for age of onset, the presence and absence, and the number and the severity of the symptoms. Our team showed that FBN1 gene expression level was a good surrogate endpoint for severity of some MFS clinical features. Eight alternative transcripts are referenced for the FBN1 gene. We hypothesized that MFS clinical variability could be related to specific FBN1 isoforms. Isoform expression profiles were investigated in skin and adventitial fibroblasts from controls and MFS patients. The results of the study showed that, in skin and adventitial fibroblasts, only three isoforms were found: FBN1_001, FBN1_004, and FBN1_009. The main isoform was FBN1_001 and it was significantly reduced in skin and adventitial fibroblasts of MFS patients. The expressions of FBN1_004 and FBN1_009 isoforms were similar between controls and MFS patients. However, the expression of the three isoforms was correlated only in patients. Furthermore, their expression levels were associated with the presence of ectopia lentis in MFS patients. Therefore, our results highlight that the two minor alternatively spliced FBN1 isoforms play a possible role in the pathogenesis of the disease.
Insights
Marfan syndrome (MFS) clinical variability may stem from specific FBN1 gene isoforms. Reduced FBN1_001 expression and altered minor isoforms in MFS patients correlate with disease severity and ectopia lentis.
Area of Science:
- Genetics
- Molecular Biology
- Connective Tissue Disorders
Background:
- Marfan syndrome (MFS) is a rare genetic disorder affecting connective tissue, primarily caused by FBN1 gene mutations.
- Significant variability exists in MFS presentation, including age of onset and symptom severity.
- Previous research indicated FBN1 gene expression levels correlate with certain MFS clinical features.
Purpose of the Study:
- To investigate if specific FBN1 gene isoforms contribute to the phenotypic variability observed in Marfan syndrome.
- To analyze the expression profiles of FBN1 isoforms in fibroblasts from MFS patients and healthy controls.
Main Methods:
- Fibroblast cultures were established from MFS patients and controls.
- Quantitative analysis of FBN1 alternative transcript isoforms (FBN1_001, FBN1_004, FBN1_009) was performed using skin and adventitial fibroblasts.
- Correlations between isoform expression levels and clinical manifestations, such as ectopia lentis, were assessed.
Main Results:
- Only three FBN1 isoforms (FBN1_001, FBN1_004, FBN1_009) were detected in fibroblasts.
- The primary isoform, FBN1_001, was significantly reduced in MFS patient fibroblasts compared to controls.
- Expression of FBN1_004 and FBN1_009 isoforms did not differ between groups, but their levels correlated in MFS patients and were associated with ectopia lentis.
Conclusions:
- The study suggests that alternative splicing of the FBN1 gene, particularly involving minor isoforms FBN1_004 and FBN1_009, may play a role in Marfan syndrome pathogenesis.
- Differential expression and correlation of FBN1 isoforms are linked to clinical variability, including ocular complications like ectopia lentis.
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