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Proteomic Analysis Reveals Temporal Changes in Protein Expression in Human Induced Pluripotent Stem Cell-Derived
Nicola Hellen1, Carolina Pinto Ricardo1, Karine Vauchez1
11 Myocardial Function, National Heart and Lung Institute, Imperial College, London, United Kingdom.
Insights
Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CM) show temporal protein expression changes during 30-day culture. Early changes involve protein synthesis reduction, followed by metabolic pathway shifts, indicating hiPSC-CM development.
Area of Science:
- Cardiovascular Biology
- Stem Cell Biology
- Proteomics
Background:
- Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CM) are promising for regenerative medicine and drug screening.
- hiPSC-CMs exhibit key cardiomyocyte features but resemble fetal/neonatal cells, necessitating further characterization.
- Understanding temporal protein expression changes is crucial for optimizing hiPSC-CM applications.
Purpose of the Study:
- To investigate the effects of short-term (30-day) in vitro culture on hiPSC-CM protein expression.
- To identify temporal changes in protein profiles related to cardiomyocyte function and maturation.
- To assess the developmental trajectory of hiPSC-CMs during early culture.
Main Methods:
- Utilized tandem mass tags for cell lysate labeling and multiplexing.
- Analyzed global protein expression changes over a 30-day culture period post-thaw.
- Quantified time-dependent alterations in proteins associated with cardiomyocyte function.
Main Results:
- Pronounced protein expression changes occurred within the first 2 weeks, marked by reduced proteins in synthesis and ubiquitination.
- Between weeks 2 and 4, metabolic pathways dominated, suggesting a shift from glycolysis to oxidative phosphorylation.
- Detected time-dependent changes in proteins related to contraction, excitation-contraction coupling, and metabolism, with varied functional outcomes.
Conclusions:
- hiPSC-CMs undergo significant temporal protein expression changes during 30 days of in vitro culture.
- These changes indicate a developmental progression, including metabolic shifts, though not always leading to anticipated maturation.
- The study provides insights into hiPSC-CM development, essential for their effective use in research and therapy.
Abstract:
Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CM) hold great promise for regenerative medicine and in vitro screening. Despite displaying key cardiomyocyte phenotypic characteristics, they more closely resemble fetal/neonatal cardiomyocytes, and further characterization is necessary. By combining the use of tandem mass tags to label cell lysates, followed by multiplexing, we have determined the effects of short-term (30 day) in vitro culture on hiPSC-CM protein expression. We found that hiPSC-CM exhibit temporal changes in global protein expression; alterations in protein expression were pronounced during the first 2 weeks following thaw and dominated by reductions in proteins associated with protein synthesis and ubiquitination. Between 2 and 4 weeks, proceeding thaw alterations in protein expression were dominated by metabolic pathways, indicating a potential temporal metabolic shift from glycolysis toward oxidative phosphorylation. Time-dependent changes in proteins associated with cardiomyocyte contraction, excitation-contraction coupling, and metabolism were detected. While some were associated with expected functional outcomes in terms of morphology or electrophysiology, others such as metabolism did not produce the anticipated maturation of hiPSC-CM. In several cases, a predicted outcome was not clear because of the concerted changes in both stimulatory and inhibitory pathways. Nevertheless, clear development of hiPSC-CM over this time period was evident.
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