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Updated: Jan 29, 2026

Characterization of Neuronal Lysosome Interactome with Proximity Labeling Proteomics
Published on: June 23, 2022
An immunoproteomic approach to characterize the CAR interactome and signalosome
Maria C Ramello1, Ismahène Benzaïd1, Brent M Kuenzi2,3
1Department of Immunology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA.
Abstract:
Adoptive transfer of T cells that express a chimeric antigen receptor (CAR) is an approved immunotherapy that may be curative for some hematological cancers. To better understand the therapeutic mechanism of action, we systematically analyzed CAR signaling in human primary T cells by mass spectrometry. When we compared the interactomes and the signaling pathways activated by distinct CAR-T cells that shared the same antigen-binding domain but differed in their intracellular domains and their in vivo antitumor efficacy, we found that only second-generation CARs induced the expression of a constitutively phosphorylated form of CD3ζ that resembled the endogenous species. This phenomenon was independent of the choice of costimulatory domains, or the hinge/transmembrane region. Rather, it was dependent on the size of the intracellular domains. Moreover, the second-generation design was also associated with stronger phosphorylation of downstream secondary messengers, as evidenced by global phosphoproteome analysis. These results suggest that second-generation CARs can activate additional sources of CD3ζ signaling, and this may contribute to more intense signaling and superior antitumor efficacy that they display compared to third-generation CARs. Moreover, our results provide a deeper understanding of how CARs interact physically and/or functionally with endogenous T cell molecules, which will inform the development of novel optimized immune receptors.
Insights
Second-generation chimeric antigen receptor (CAR)-T cells induce specific CD3ζ signaling, enhancing T cell activation for improved cancer immunotherapy. This finding clarifies CAR-T cell mechanisms and optimizes future treatments.
Area of Science:
- Immunotherapy
- Cellular immunology
- Cancer biology
Background:
- Chimeric antigen receptor (CAR)-T cell therapy is a successful immunotherapy for hematological cancers.
- Understanding the precise signaling mechanisms of CARs is crucial for optimizing their efficacy.
Purpose of the Study:
- To systematically analyze chimeric antigen receptor (CAR) signaling in human primary T cells.
- To compare signaling pathways activated by different CAR designs with varying intracellular domains and antitumor efficacy.
Main Methods:
- Mass spectrometry-based interactome and phosphoproteome analysis of primary human T cells engineered with distinct CARs.
- Comparison of signaling events triggered by second-generation and third-generation CAR designs.
Main Results:
- Second-generation CARs, but not third-generation, induced constitutively phosphorylated CD3ζ, resembling endogenous species.
- This CD3ζ phosphorylation was dependent on the size of the intracellular domains, not costimulatory or hinge regions.
- Second-generation CARs showed stronger downstream secondary messenger phosphorylation, indicating more intense signaling.
Conclusions:
- Second-generation CAR designs activate additional CD3ζ signaling sources, leading to enhanced signaling and superior antitumor efficacy compared to third-generation CARs.
- These findings provide insights into CAR-T cell physical and functional interactions with endogenous T cell molecules.
- This knowledge will guide the development of novel, optimized immune receptors for improved cancer immunotherapy.
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