Crystal structure of MICU2 and comparison with MICU1 reveal insights into the uniporter gating mechanism

The mitochondrial uniporter is a Ca²⁺-channel complex resident within the organelle's inner membrane. In mammalian cells the uniporter's activity is regulated by Ca²⁺ due to concerted action of MICU1 and MICU2, two paralogous, but functionally distinct, EF-hand Ca²⁺-binding proteins. Here we present the X-ray structure of the apo form of Mus musculus MICU2 at 2.5-Å resolution. The core structure of MICU2 is very similar to that of MICU1. It consists of two lobes, each containing one canonical Ca²⁺-binding EF-hand (EF1, EF4) and one structural EF-hand (EF2, EF3). Two molecules of MICU2 form a symmetrical dimer stabilized by highly conserved hydrophobic contacts between exposed residues of EF1 of one monomer and EF3 of another. Similar interactions stabilize MICU1 dimers, allowing exchange between homo- and heterodimers. The tight EF1-EF3 interface likely accounts for the structural and functional coupling between the Ca²⁺-binding sites in MICU1, MICU2, and their complex that leads to the previously reported Ca²⁺-binding cooperativity and dominant negative effect of mutation of the Ca²⁺-binding sites in either protein. The N- and C-terminal segments of the two proteins are distinctly different. In MICU2 the C-terminal helix is significantly longer than in MICU1, and it adopts a more rigid structure. MICU2's C-terminal helix is dispensable in vitro for its interaction with MICU1 but required for MICU2's function in cells. We propose that in the MICU1-MICU2 oligomeric complex the C-terminal helices of both proteins form a central semiautonomous assembly which contributes to the gating mechanism of the uniporter.