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MicroRNA layer of MHC in infectious diseases
Sâmila Natiane Ferreira1, Mauro de Meira Leite1, Monique Suellen Lima da Silveira2
1Human and Medical Genetics Laboratory, Federal University of Pará, Brazil; Programa de Pós-Graduação em Biologia de Agentes Infecciosos e Parasitários, Brazil.
Abstract:
The Major Histocompatibility Complex (MHC) harbors key genes of the immune response that are likely useful as biomarkers for infectious diseases. However, little is known about their microRNAs and what role they play in infections. The present study aimed to describe the miRNA genes in the MHC (MHC-miRNA), their variability and associations with infectious diseases. Additionally, MHC-miRNA host and target genes were also evaluated in associations with infectious diseases. Surveys in several databases and literature reviews identified 48 MHC-miRNA genes, with high SNP and CNV variability able to disrupt MHC-miRNA expression and putatively under selective pressure. Eight MHC-miRNAs were found inside or close regions of classical MHC rearrangements (RCCX and DRB genome organization). The proportion of MHC-miRNAs associated with infections (23%) was higher than the proportion found for the 1917 hsa-miRNA (4%). Additionally, 35 MHC-miRNAs (57%) have at least one of their target genes associated with infectious diseases, while all nine MHC-miRNA whose host genes were associated with infections have also their target genes associated with infections, being host and target genes of five MHC-miRNAs reported to be associated with the same diseases. This finding may reflect a concerted miRNA-mediated immune response mechanism triggered by infection.
Insights
This study identifies 48 microRNA genes within the Major Histocompatibility Complex (MHC) and reveals their significant association with infectious diseases, suggesting a coordinated immune response mechanism.
Area of Science:
- Immunogenetics
- Molecular Biology
- Genomics
Background:
- The Major Histocompatibility Complex (MHC) is crucial for immune responses and potentially useful for infectious disease biomarkers.
- MicroRNAs (miRNAs) within the MHC (MHC-miRNAs) and their roles in infections remain largely unexplored.
Purpose of the Study:
- To characterize MHC-miRNA genes, their variability, and associations with infectious diseases.
- To investigate the involvement of MHC-miRNA host and target genes in infectious disease pathogenesis.
Main Methods:
- Database surveys and literature reviews to identify MHC-miRNA genes.
- Analysis of single nucleotide polymorphism (SNP) and copy number variation (CNV) in MHC-miRNAs.
- Evaluation of associations between MHC-miRNAs, their host genes, and target genes with infectious diseases.
Main Results:
- Identified 48 MHC-miRNA genes, many exhibiting high variability (SNP, CNV) potentially impacting expression.
- Found a higher proportion of MHC-miRNAs associated with infections (23%) compared to general human miRNAs (4%).
- Demonstrated that 57% of MHC-miRNAs target genes associated with infections, and host genes of 9 MHC-miRNAs were infection-associated, with shared targets.
Conclusions:
- MHC-miRNAs are significantly implicated in infectious disease responses.
- Genetic variability in MHC-miRNAs may influence susceptibility to infections.
- A coordinated miRNA-mediated immune mechanism involving both host and target genes likely operates during infection.
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