Related Experiment Video
Updated: Jan 29, 2026

High-throughput Antiviral Assays to Screen for Inhibitors of Zika Virus Replication
Published on: October 30, 2021
Identification of small molecule inhibitors targeting the Zika virus envelope protein
Jared Pitts1, Chih-Yun Hsia1, Wenlong Lian1
1Department of Microbiology and Blavatnik Institute, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.
Abstract:
The recent emergence of Zika virus, a mosquito-borne flavivirus, in the Americas has shed light on the severe neurological diseases associated with infection, notably congenital microcephaly in newborns and Guillain-Barré syndrome in adults. Despite the recent focus on Zika virus, there are currently no approved vaccines or antiviral therapies available to treat or prevent infection. In this study we established a competitive amplified luminescent proximity homogeneous assay (ALPHAscreen) to identify small molecule inhibitors targeting the envelope protein of Zika virus (Zika E). We utilized this assay to screen two libraries of nearly 27,000 compounds and identified seven novel inhibitors of Zika E. Characterization of these primary screening leads demonstrated that inhibition of Zika virus occurs at non-cytotoxic concentrations for all seven lead compounds. In addition, we found that all seven lead compounds have potent activity against the closely related dengue virus 2 but not vesicular stomatitis virus, an unrelated enveloped virus. Biochemical experiments indicate that these compounds act by preventing E-mediated membrane fusion. This work highlights a new method for the discovery and optimization of direct-acting antivirals targeting the E protein of Zika and other flaviviruses.
Insights
Researchers discovered seven new small molecule inhibitors for Zika virus by screening nearly 27,000 compounds. These inhibitors target the Zika envelope protein and show promise for treating Zika and dengue virus infections.
Area of Science:
- Virology
- Drug Discovery
- Biochemistry
Background:
- Zika virus, a mosquito-borne flavivirus, causes severe neurological diseases like microcephaly and Guillain-Barré syndrome.
- No approved vaccines or antiviral therapies currently exist for Zika virus infection.
- The envelope (E) protein of Zika virus is a key target for antiviral development.
Purpose of the Study:
- To establish a novel assay for identifying small molecule inhibitors of Zika virus.
- To screen compound libraries for inhibitors targeting the Zika virus envelope protein.
- To characterize the antiviral activity and mechanism of identified inhibitors.
Main Methods:
- Development of a competitive amplified luminescent proximity homogeneous assay (ALPHAscreen).
- Screening of two compound libraries (nearly 27,000 compounds) using the ALPHAscreen assay.
- Characterization of lead compounds for antiviral activity, cytotoxicity, and mechanism of action (membrane fusion inhibition).
Main Results:
- Seven novel small molecule inhibitors targeting the Zika virus envelope protein were identified.
- All identified inhibitors demonstrated efficacy at non-cytotoxic concentrations.
- Compounds showed potent activity against dengue virus 2 but not vesicular stomatitis virus, suggesting a flavivirus-specific mechanism.
Conclusions:
- The developed ALPHAscreen assay is effective for discovering direct-acting antivirals against Zika virus.
- The identified compounds inhibit Zika virus by preventing E protein-mediated membrane fusion.
- This work provides a new strategy for developing antivirals targeting the envelope protein of Zika and other flaviviruses.
Related Concept Videos
Eukaryotic Transcription Inhibitors
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Outer Layers of the Cell Envelope
What are Viruses?
Negative Regulator Molecules
Molecules and Compounds
Positive Regulator Molecules

