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Updated: Jan 29, 2026

Establishment and Quantification of De Novo Lytic Infection by Cell-free Kaposi's Sarcoma-Associated Herpesvirus
Published on: August 15, 2025
Human IFIT proteins inhibit lytic replication of KSHV: A new feed-forward loop in the innate immune system
Dajiang Li1, Sankar Swaminathan1,2
1Division of Infectious Diseases, Department of Internal Medicine, University of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Abstract:
Kaposi's sarcoma-associated herpesvirus (KSHV) is causally associated with Kaposi's sarcoma, primary effusion lymphoma (PEL) and multicentric Castleman's disease. The IFIT family of proteins inhibits replication of some viruses, but their effects on KSHV lytic replication was unknown. Here we show that KSHV lytic replication induces IFIT expression in epithelial cells. Depletion of IFIT1, IFIT2 and IFIT3 (IFITs) increased infectious KSHV virion production 25-32-fold compared to that in control cells. KSHV lytic gene expression was upregulated broadly with preferential activation of several genes involved in lytic viral replication. Intracellular KSHV genome numbers were also increased by IFIT knockdown, consistent with inhibition of KSHV DNA replication by IFITs. RNA seq demonstrated that IFIT depletion also led to downregulation of IFN β and several interferon-stimulated genes (ISGs), especially OAS proteins. OAS down-regulation led to decreased RNase L activity and slightly increased total RNA yield. IFIT immunoprecipitation also showed that IFIT1 bound to viral mRNAs and cellular capped mRNAs but not to uncapped RNA or trimethylated RNAs, suggesting that IFIT1 may also inhibit viral mRNA expression through direct binding. In summary, IFIT inhibits KSHV lytic replication through positively regulating the IFN β and OAS RNase L pathway to degrade RNA in addition to possibly directly targeting viral mRNAs.
Insights
The Interferon-induced proteins with tetratricp repeats (IFITs) inhibit Kaposi
Area of Science:
- Virology
- Immunology
- Molecular Biology
Background:
- Kaposi's sarcoma-associated herpesvirus (KSHV) causes Kaposi's sarcoma, primary effusion lymphoma (PEL), and multicentric Castleman's disease.
- The role of Interferon-induced proteins with tetratricp repeats (IFITs) in KSHV lytic replication was previously unknown.
Purpose of the Study:
- To investigate the effect of IFIT proteins on KSHV lytic replication.
- To elucidate the mechanisms by which IFITs might regulate KSHV replication.
Main Methods:
- Depletion of IFIT1, IFIT2, and IFIT3 (IFITs) in KSHV-infected epithelial cells.
- Quantification of infectious KSHV virion production and intracellular viral genomes.
- RNA sequencing (RNA-seq) to analyze gene expression changes, including interferon-stimulated genes (ISGs).
- Immunoprecipitation assays to assess IFIT1 binding to viral and cellular mRNAs.
Main Results:
- IFIT depletion significantly increased infectious KSHV virion production (25-32 fold) and intracellular viral DNA.
- KSHV lytic gene expression was broadly upregulated upon IFIT knockdown.
- IFIT depletion led to downregulation of Interferon beta (IFN β) and downstream ISGs, including OAS proteins, reducing RNase L activity.
- IFIT1 directly binds to viral and cellular capped mRNAs, suggesting a role in inhibiting viral mRNA expression.
Conclusions:
- IFIT proteins inhibit KSHV lytic replication.
- IFITs exert their inhibitory effect by upregulating the IFN β and OAS-RNase L pathway, promoting RNA degradation.
- IFITs may also directly target and inhibit viral mRNA expression through binding.
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