Related Experiment Video
Updated: Jan 28, 2026

Author Spotlight: A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data
Published on: December 1, 2023
A novel, liver-specific long noncoding RNA LINC01093 suppresses HCC progression by interaction with IGF2BP1 to
Jia He1, Qiaozhu Zuo1, Bo Hu2
1State Key Laboratory of Oncogenes and Related Genes, Shanghai Cancer Institute, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200032, China.
Abstract:
Long noncoding RNAs (lncRNAs) are implicated as novel drivers in hepatocellular carcinoma (HCC), but the underlying mechanisms of this relationship with hepatocarcinogenesis are unknown. We report a novel, liver-specific lncRNA LINC01093 that shows significant downregulation in HCC tissues. LINC01093 expression is inversely correlated with cancer embolus and HCC TNM stage and as a prognostic predictor for HCC patients. LINC01093 overexpression significantly suppresses HCC cell proliferation and metastasis in vitro and in vivo. Conversely, its knockdown promotes HCC progression. Mechanistic analyses indicate that LINC01093 directly binds insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1), interfering with interaction between IGF2BP1 and glioma-associated oncogene homolog 1 (GLI1) mRNA. The result is degradation of GLI1 mRNA, further affecting expression of GLI1 downstream molecules involved in HCC progression. The liver-enriched lncRNA LINC01093 is a promising prognostic indicator for HCC patients, and the newly identified LINC01093-IGF2BP1-GLI1 axis shows potential for therapeutic targets in HCC.
Insights
A novel liver-specific long noncoding RNA (lncRNA), LINC01093, is downregulated in hepatocellular carcinoma (HCC). Its restoration suppresses HCC progression by targeting the IGF2BP1-GLI1 axis, indicating therapeutic potential.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Long noncoding RNAs (lncRNAs) play roles in cancer, but their specific functions in hepatocellular carcinoma (HCC) and hepatocarcinogenesis remain unclear.
- Identifying novel molecular players and their mechanisms is crucial for understanding and treating HCC.
Purpose of the Study:
- To identify and characterize a novel liver-specific lncRNA involved in HCC.
- To elucidate the underlying molecular mechanisms of this lncRNA in HCC progression.
- To evaluate its potential as a prognostic biomarker and therapeutic target for HCC.
Main Methods:
- Quantitative real-time PCR to assess LINC01093 expression in HCC tissues and cell lines.
- Correlation analysis between LINC01093 expression and clinical parameters (TNM stage, metastasis).
- In vitro and in vivo experiments to evaluate the effects of LINC01093 overexpression and knockdown on HCC cell proliferation and metastasis.
- RNA immunoprecipitation and Western blot assays to investigate the interaction between LINC01093, IGF2BP1, and GLI1 mRNA.
Main Results:
- LINC01093 was significantly downregulated in HCC tissues and inversely correlated with cancer embolus and TNM stage.
- Overexpression of LINC01093 suppressed HCC cell proliferation and metastasis in vitro and in vivo, while knockdown promoted HCC progression.
- LINC01093 directly binds IGF2BP1, disrupting the IGF2BP1-GLI1 mRNA interaction, leading to GLI1 mRNA degradation and reduced expression of downstream oncogenic molecules.
Conclusions:
- The liver-enriched lncRNA LINC01093 acts as a tumor suppressor in HCC.
- LINC01093 serves as a promising prognostic indicator for HCC patients.
- The LINC01093-IGF2BP1-GLI1 axis represents a potential therapeutic strategy for HCC.
More Related Videos
09:27Analysis of Liver Microenvironment During Early Progression of Non-Alcoholic Fatty Liver Disease-Associated Hepatocellular Carcinoma in Zebrafish
Published on: April 1, 2021
12:21Measurement of mRNA Decay Rates in Saccharomyces cerevisiae Using rpb1-1 Strains
Published on: December 13, 2014
Related Concept Videos
Nonsense-mediated mRNA Decay
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Nonsense-mediated mRNA Decay
RNA Editing
pre-mRNA Processing
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
Regulated mRNA Transport
Chromatin Structure Regulates pre-mRNA Processing
The chromatin structure, especially...