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Published on: August 14, 2021
In Silico Analysis of Genetic VapC Profiles from the Toxin-Antitoxin Type II VapBC Modules among Pathogenic,
Alexandre P Y Lopes1, Bruna O P Azevedo2,3, Rebeca C Emídio4,5
1Laboratório Especial de Desenvolvimento de Vacinas-Centro de Biotecnologia, Instituto Butantan, Avenida Vital Brazil, 1500, 05503-900 São Paulo, Brazil. alexandre.lopes@butantan.gov.br.
Abstract:
Pathogenic Leptospira spp. is the etiological agent of leptospirosis. The high diversity among Leptospira species provides an array to look for important mediators involved in pathogenesis. Toxin-antitoxin (TA) systems represent an important survival mechanism on stress conditions. vapBC modules have been found in nearly one thousand genomes corresponding to about 40% of known TAs. In the present study, we investigated TA profiles of some strains of Leptospira using a TA database and compared them through protein alignment of VapC toxin sequences among Leptospira spp. genomes. Our analysis identified significant differences in the number of putative vapBC modules distributed in pathogenic, saprophytic, and intermediate strains: four in L. interrogans, three in L. borgpetersenii, eight in L. biflexa, and 15 in L. licerasiae. The VapC toxins show low identity among amino acid sequences within the species. Some VapC toxins appear to be exclusively conserved in unique species, others appear to be conserved among pathogenic or saprophytic strains, and some appear to be distributed randomly. The data shown here indicate that these modules evolved in a very complex manner, which highlights the strong need to identify and characterize new TAs as well as to understand their regulation networks and the possible roles of TA systems in pathogenic bacteria.
Insights
Toxin-antitoxin (TA) systems, like VapBC modules, vary significantly across Leptospira species. Understanding these TA systems is crucial for comprehending bacterial pathogenesis and developing new therapeutic strategies.
Area of Science:
- Microbiology
- Bacterial Pathogenesis
- Genomics
Background:
- Leptospira species cause leptospirosis, with significant diversity influencing pathogenesis.
- Toxin-antitoxin (TA) systems are vital for bacterial survival under stress.
- VapBC modules are a prevalent type of TA system found in numerous bacterial genomes.
Purpose of the Study:
- To investigate the toxin-antitoxin (TA) profiles of various Leptospira strains.
- To compare the distribution and evolution of VapBC modules across different Leptospira species.
- To explore the potential role of TA systems in Leptospira pathogenesis.
Main Methods:
- Utilized a toxin-antitoxin (TA) database for analysis.
- Performed protein sequence alignment of VapC toxins across Leptospira genomes.
- Quantified and compared the number of putative VapBC modules in pathogenic, saprophytic, and intermediate strains.
Main Results:
- Identified varying numbers of VapBC modules: 4 in L. interrogans, 3 in L. borgpetersenii, 8 in L. biflexa, and 15 in L. licerasiae.
- Observed low amino acid sequence identity among VapC toxins within species.
- Found species-specific, strain-specific (pathogenic/saprophytic), and random distribution patterns for some VapC toxins.
Conclusions:
- VapBC modules exhibit complex evolutionary patterns within Leptospira.
- Significant differences in TA profiles exist between pathogenic and saprophytic Leptospira strains.
- Further research is needed to characterize novel TA systems and their regulatory networks in pathogenic bacteria.
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