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Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example
Published on: March 11, 2020
Usutu Virus Isolated from Rodents in Senegal
Moussa Moïse Diagne1, Marie Henriette Dior Ndione2,3, Nicholas Di Paola4,5
1Arboviruses and Hemorrhagic Fever Viruses Unit, Virology Department, Institut Pasteur de Dakar, BP220 Dakar, Senegal. MoussaMoise.DIAGNE@pasteur.sn.
Usutu virus (USUV) was detected in small mammals in Senegal, revealing a potential new reservoir. This finding highlights the need for increased surveillance of rodents and shrews for Usutu virus.
Area of Science:
- Virology
- Ecology
- Epidemiology
Background:
- Usutu virus (USUV) is a mosquito-borne flavivirus primarily associated with birds.
- Recent detections in bats and horses suggest a broader host range, challenging the established enzootic cycle.
- The potential for non-avian reservoirs of USUV remains largely unexplored.
Purpose of the Study:
- To investigate the presence of Usutu virus in small mammals in Senegal.
- To characterize novel USUV isolates from these mammals.
- To assess the potential role of small mammals as USUV reservoirs.
Main Methods:
- Detection, isolation, and sequencing of Usutu virus from small mammals in Kedougou, Senegal.
- Molecular characterization of viral isolates.
- In vivo growth dynamics and pathogenicity assessment.
Main Results:
- Usutu virus was successfully isolated from five asymptomatic small mammals (rodents and a shrew).
- These isolates were genetically similar to known pathogenic USUV strains.
- This marks the first isolation of Usutu virus from rodents or shrews.
Conclusions:
- Terrestrial small mammals, specifically rodents and shrews, can harbor Usutu virus.
- These findings necessitate enhanced surveillance of small mammals for USUV in Africa and Europe.
- Considering small mammals in epidemiological efforts is crucial for understanding and controlling USUV transmission.
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