Absence of Global Stress Regulation in Escherichia coli Promotes Pathoadaptation and Novel c-di-GMP-dependent Metabolic Capability
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Updated: Jan 28, 2026

Detection of the pH-dependent Activity of Escherichia coli Chaperone HdeB In Vitro and In Vivo
Published on: October 23, 2016
Nikola Zlatkov1, Bernt Eric Uhlin2
1The Laboratory for Molecular Infection Medicine Sweden (MIMS), Department of Molecular Biology, Umeå University, Umea, Sweden.
Abstract:
Pathoadaptive mutations linked to c-di-GMP signalling were investigated in neonatal meningitis-causing Escherichia coli (NMEC). The results indicated that NMEC strains deficient in RpoS (the global stress regulator) maintained remarkably low levels of c-di-GMP, a major bacterial sessility-motility switch. Deletion of ycgG2, shown here to encode a YcgG allozyme with c-di-GMP phosphodiesterase activity, and the restoration of RpoS led to a decrease in S-fimbriae, robustly produced in artificial urine, hinting that the urinary tract could serve as a habitat for NMEC. We showed that NMEC were skilled in aerobic citrate utilization in the presence of glucose, a property that normally does not exist in E. coli. Our data suggest that this metabolic novelty is a property of extraintestinal pathogenic E. coli since we reconstituted this ability in E. coli UTI89 (a cystitis isolate) via deactivation rpoS; additionally, a set of pyelonephritis E. coli isolates were shown here to aerobically use citrate in the presence of glucose. We found that the main reason for this metabolic capability is RpoS inactivation leading to the production of the citrate transporter CitT, exploited by NMEC for ferric citrate uptake dependent on YcgG2 (an allozyme with c-di-GMP phosphodiesterase activity).
Insights
Neonatal meningitis-causing E. coli (NMEC) utilizes unique metabolic pathways, including aerobic citrate use, by inactivating the RpoS regulator. This adaptation, linked to cyclic di-GMP (c-di-GMP) signaling, aids NMEC survival and pathogenesis.
Area of Science:
- Microbiology
- Bacterial Pathogenesis
- Molecular Biology
Background:
- Neonatal meningitis-causing Escherichia coli (NMEC) harbors pathoadaptive mutations affecting cyclic di-GMP (c-di-GMP) signaling.
- RpoS, a global stress regulator, influences c-di-GMP levels, impacting bacterial sessility and motility.
Purpose of the Study:
- To investigate the role of pathoadaptive mutations in c-di-GMP signaling in NMEC.
- To understand the metabolic adaptations of NMEC, particularly aerobic citrate utilization.
- To elucidate the connection between RpoS, c-di-GMP, and NMEC virulence factors like S-fimbriae.
Main Methods:
- Analysis of NMEC strains with varying RpoS and ycgG2 gene status.
- Assessment of c-di-GMP levels and S-fimbriae production.
- Investigation of aerobic citrate utilization in the presence of glucose.
- Reconstitution of metabolic abilities in E. coli UTI89 and analysis of pyelonephritis isolates.
Main Results:
- NMEC strains deficient in RpoS showed low c-di-GMP levels.
- Deletion of ycgG2 and RpoS restoration decreased S-fimbriae production, suggesting the urinary tract as a potential NMEC habitat.
- NMEC exhibited aerobic citrate utilization with glucose, a novel trait for E. coli, linked to RpoS inactivation.
- RpoS inactivation leads to CitT transporter production for ferric citrate uptake, dependent on YcgG2's phosphodiesterase activity.
Conclusions:
- RpoS inactivation is key to NMEC's unique aerobic citrate utilization, enabling ferric citrate uptake via CitT.
- YcgG2, a c-di-GMP phosphodiesterase allozyme, plays a crucial role in this metabolic adaptation.
- These findings highlight NMEC's specialized pathoadaptive strategies for survival and pathogenesis, potentially involving the urinary tract.
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