Development of Highly Potent, Selective, and Cellular Active Triazolo[1,5- a]pyrimidine-Based Inhibitors Targeting

Shuai Wang1,2,3, Lijie Zhao1,2,3, Xiao-Jing Shi1,2,3

  • 1School of Pharmaceutical Sciences and Institute of Drug Discovery & Development , Zhengzhou University , Zhengzhou 450001 , China.

Insights

Researchers developed novel triazolo[1,5- a]pyrimidine inhibitors targeting the DCN1-UBC12 interaction. Compound WS-383 selectively inhibits Cul3/1 neddylation, showing therapeutic potential for diseases linked to cullin-RING ubiquitin ligase dysfunction.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Medicinal Chemistry

Background:

  • Cullin-RING ubiquitin ligases (CRLs) regulate ~20% of cellular protein degradation and are implicated in human diseases.
  • Targeting CRLs is an emerging therapeutic strategy for various diseases.

Purpose of the Study:

  • To discover and optimize novel inhibitors targeting the DCN1-UBC12 interaction.
  • To evaluate the therapeutic potential of these inhibitors for diseases involving CRL dysfunction.

Main Methods:

  • Hit compound discovery from an in-house library.
  • Structure-based optimization of triazolo[1,5- a]pyrimidine derivatives.
  • Biochemical assays to determine inhibitory activity (IC50) and selectivity.
  • Cellular assays to assess target engagement and downstream effects.

Main Results:

  • Identified WS-383, a potent and reversible inhibitor of the DCN1-UBC12 interaction (IC50 = 11 nM).
  • WS-383 demonstrated selectivity over other kinases and inhibited Cul3/1 neddylation selectively.
  • Compound showed cellular target engagement with DCN1 and induced accumulation of p21, p27, and NRF2.

Conclusions:

  • Targeting the DCN1-UBC12 interaction is a viable strategy for selective Cul3/1 neddylation inhibition.
  • WS-383 and similar compounds hold therapeutic potential for diseases associated with dysregulated Cul3/1 activity.

Related Concept Videos

Protein Networks02:26

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.5K
Protein-protein Interfaces02:04

Protein-protein Interfaces

Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
14.7K
Protein and Protein Structure02:15

Protein and Protein Structure

Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
87.4K
Protein Kinases and Phosphatases02:54

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
15.1K
Regulated Protein Degradation02:58

Regulated Protein Degradation

It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
8.8K
Activation and Inactivation of G Proteins01:22

Activation and Inactivation of G Proteins

Heterotrimeric G proteins are guanine nucleotide-binding proteins. As the name suggests, heterotrimeric G proteins are composed of three subunits: alpha, beta, and gamma. They remain GDP-bound or GTP-bound inside the cells and switch between inactive/active states. The Gα subunit possesses the nucleotide-binding pocket that binds guanine nucleotides and switches between GDP or GTP-bound states. In contrast, the Gꞵ and Gγ subunits are always bound together with high...
11.4K