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An Oxidative Pathway for Microbial Utilization of Methylphosphonic Acid as a Phosphate Source
Simanga R Gama1, Margret Vogt2, Thomas Kalina2
1Department of Chemistry , Queen's University , Kingston , Ontario , Canada.
Abstract:
Methylphosphonic acid is synthesized by marine bacteria and is a prominent component of dissolved organic phosphorus. Consequently, methylphosphonic acid also serves as a source of inorganic phosphate (Pi) for marine bacteria that are starved of this nutrient. Conversion of methylphosphonic acid into Pi is currently only known to occur through the carbon-phosphorus lyase pathway, yielding methane as a byproduct. In this work, we describe an oxidative pathway for the catabolism of methylphosphonic acid in Gimesia maris DSM8797. G. maris can use methylphosphonic acid as Pi sources despite lacking a phn operon encoding a carbon-phosphorus lyase pathway. Instead, the genome contains a locus encoding homologues of the non-heme Fe(II) dependent oxygenases HF130PhnY* and HF130PhnZ, which were previously shown to convert 2-aminoethylphosphonic acid into glycine and Pi. GmPhnY* and GmPhnZ1 were produced in E. coli and purified for characterization in vitro. The substrate specificities of the enzymes were evaluated with a panel of synthetic phosphonates. Via 31P NMR spectroscopy, it is demonstrated that the GmPhnY* converts methylphosphonic acid to hydroxymethylphosphonic acid, which in turn is oxidized by GmPhnZ1 to produce formic acid and Pi. In contrast, 2-aminoethylphosphonic acid is not a substrate for GmPhnY* and is therefore not a substrate for this pathway. These results thus reveal a new metabolic fate for methylphosphonic acid.
Insights
Marine bacteria metabolize methylphosphonic acid via a novel oxidative pathway, independent of the known carbon-phosphorus lyase. This discovery reveals a new source of inorganic phosphate (Pi) for oceanic microbes.
Area of Science:
- Microbiology
- Biochemistry
- Environmental Science
Background:
- Methylphosphonic acid is a key component of marine dissolved organic phosphorus.
- Marine bacteria utilize methylphosphonic acid as a source of inorganic phosphate (Pi) when other sources are scarce.
- The known pathway for methylphosphonic acid conversion to Pi involves carbon-phosphorus lyase, producing methane.
Purpose of the Study:
- To investigate the metabolic fate of methylphosphonic acid in marine bacteria lacking the carbon-phosphorus lyase pathway.
- To identify and characterize novel enzymes involved in methylphosphonic acid catabolism.
Main Methods:
- Genomic analysis of Gimesia maris DSM8797 to identify relevant gene loci.
- Heterologous expression and purification of putative enzymes (GmPhnY* and GmPhnZ1) in E. coli.
- In vitro enzymatic assays using synthetic phosphonates and 31P NMR spectroscopy to determine reaction products.
Main Results:
- Gimesia maris DSM8797 catabolizes methylphosphonic acid via an oxidative pathway, distinct from the carbon-phosphorus lyase route.
- The pathway involves two non-heme Fe(II)-dependent oxygenases, GmPhnY* and GmPhnZ1.
- GmPhnY* converts methylphosphonic acid to hydroxymethylphosphonic acid, which GmPhnZ1 oxidizes to formic acid and Pi.
- This pathway does not process 2-aminoethylphosphonic acid.
Conclusions:
- A new oxidative pathway for methylphosphonic acid breakdown in marine bacteria has been elucidated.
- This pathway provides an alternative source of inorganic phosphate for bacteria lacking the canonical carbon-phosphorus lyase.
- The findings expand our understanding of phosphorus cycling in marine ecosystems.
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