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Performing an In Vitro Genome-Wide CRISPR Knockout Screen in Chimeric Antigen Receptor T Cells
Published on: January 31, 2025
Genome-Wide CRISPR Screening Identifies JAK1 Deficiency as a Mechanism of T-Cell Resistance
Ping Han1, Qiang Dai1, Lilv Fan1
1School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Abstract:
Somatic gene mutations play a critical role in immune evasion by tumors. However, there is limited information on genes that confer immunotherapy resistance in melanoma. To answer this question, we established a whole-genome knockout B16/ovalbumin cell line by clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 nuclease technology, and determined by in vivo adoptive OT-I T-cell transfer and an in vitro OT-I T-cell-killing assay that Janus kinase (JAK)1 deficiency mediates T-cell resistance via a two-step mechanism. Loss of JAK1 reduced JAK-Signal transducer and activator of transcription signaling in tumor cells-resulting in tumor resistance to the T-cell effector molecule interferon-and suppressed T-cell activation by impairing antigen presentation. These findings provide a novel method for exploring immunotherapy resistance in cancer and identify JAK1 as potential therapeutic target for melanoma treatment.
Insights
Janus kinase 1 (JAK1) deficiency in tumor cells causes resistance to T-cell immunotherapy by reducing interferon signaling and impairing antigen presentation. This identifies JAK1 as a potential therapeutic target for melanoma treatment.
Area of Science:
- Immunology
- Oncology
- Genetics
Background:
- Somatic gene mutations are crucial for tumor immune evasion.
- Melanoma immunotherapy resistance mechanisms require further investigation.
Purpose of the Study:
- To identify genes conferring immunotherapy resistance in melanoma.
- To elucidate the mechanism of T-cell resistance mediated by gene deficiency.
Main Methods:
- Established a whole-genome knockout B16/ovalbumin cell line using CRISPR/Cas9 technology.
- Utilized in vivo adoptive OT-I T-cell transfer and in vitro T-cell-killing assays.
Main Results:
- Janus kinase 1 (JAK1) deficiency mediates T-cell resistance through a two-step mechanism.
- Loss of JAK1 reduced JAK-Signal transducer and activator of transcription signaling, leading to tumor resistance to interferon.
- Impaired antigen presentation due to JAK1 loss suppressed T-cell activation.
Conclusions:
- JAK1 deficiency confers immunotherapy resistance in melanoma via reduced interferon signaling and impaired antigen presentation.
- This study presents a novel method for exploring cancer immunotherapy resistance.
- JAK1 is identified as a potential therapeutic target for melanoma treatment.
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