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Updated: Jan 28, 2026

RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long non-coding RNA MALAT1 regulates cardiomyocytes apoptosis after hypoxia/reperfusion injury via modulating
1NO.3 Department of Internal Medicine Cardiovascular, Cangzhou Central Hospital, China.
Abstract:
Long non-coding RNAs (lncRNAs) have been reported to be crucial modulators in various heart diseases, including myocardial infarction (MI). LncRNA metastasis associated lung adenocarcinoma transcript 1 (MALAT1) has been reported to be highly expressed in MI samples. However, the mechanism and biological function of MALAT1 in myocardial infarction are still marked. Similarly, programmed cell death 4 (PDCD4) was also upregulated in MI samples. Therefore, MALAT1 and PDCD4 were chosen to do further study. At first, qRT-PCR was applied to examine the expression patterns of MALAT1 and PDCD4. The results showed that both MALAT1 and PDCD4 were upregulated in MI mice model and the hypoxia-induced myocardial cell. Subsequently, loss-of function assays were conducted to examine the impacts of MALAT1 or PDCD4 on cellular processes. Results of MTT assay and flow cytometry analyses manifested that knockdown of MALAT1 or PDCD4 enhanced cell viability, promoted cell cycle progress and suppressed cell apoptosis. Transferase-mediated dUTP nick end labeling (TUNEL) assay revealed that MALAT1 knockdown or PDCD4 knockdown decreased cell apoptosis in MI mice model. Subsequently, mechanism experiments revealed that microRNA-200a-3p (miR-200a-3p) could bind to either MALATA1 or PDCD4. Combining with the cytoplasmic location of MALAT1, we confirmed that MALAT1 acted as a competing endogenous RNA (ceRNA) to upregulate PDCD4 by sponging miR-200a-3p. Finally, rescue assay suggested that MALAT1-miR-200a-3p-PDCD4 axis regulated the proliferation, cell cycle progression and apoptosis of hypoxia-induced myocardial cells.
Insights
Long non-coding RNA MALAT1 and PDCD4 are upregulated in myocardial infarction. MALAT1 acts as a ceRNA for miR-200a-3p, upregulating PDCD4 and impacting cell proliferation and apoptosis in heart disease.
Area of Science:
- Cardiovascular Biology
- Molecular Biology
- RNA Biology
Background:
- Long non-coding RNAs (lncRNAs) are implicated in heart diseases like myocardial infarction (MI).
- Both MALAT1 and PDCD4 are upregulated in MI, but their roles are unclear.
- Understanding their interaction is crucial for MI pathogenesis.
Purpose of the Study:
- Investigate the mechanism and function of MALAT1 and PDCD4 in myocardial infarction.
- Elucidate the regulatory axis involving MALAT1, miR-200a-3p, and PDCD4.
- Determine the impact of this axis on myocardial cell processes.
Main Methods:
- Quantitative real-time PCR (qRT-PCR) to assess gene expression.
- Loss-of-function assays (siRNA) to study MALAT1 and PDCD4.
- MTT assay, flow cytometry, and TUNEL assay for cell viability, cycle, and apoptosis.
- Mechanism studies including RNA binding analysis and rescue assays.
Main Results:
- MALAT1 and PDCD4 expression increased in MI models and hypoxic myocardial cells.
- Knockdown of MALAT1 or PDCD4 improved cell viability, cell cycle progression, and reduced apoptosis.
- MALAT1 acts as a competing endogenous RNA (ceRNA) by sponging miR-200a-3p to upregulate PDCD4.
- The MALAT1-miR-200a-3p-PDCD4 axis regulates myocardial cell proliferation and apoptosis.
Conclusions:
- MALAT1 and PDCD4 are key players in myocardial infarction.
- The MALAT1-miR-200a-3p-PDCD4 axis is a critical regulator of myocardial cell function in MI.
- This axis presents a potential therapeutic target for myocardial infarction treatment.
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