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A hybrid variable selection strategy based on continuous shrinkage of variable space in multivariate calibration.

Yong-Huan Yun1, Jun Bin2, Dong-Li Liu3

  • 1College of Food Science and Technology, Hainan University, Haikou, 570228, China; Institute of Environment and Plant Protection, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, PR China.

Analytica Chimica Acta
|March 11, 2019
PubMed
Summary

A new hybrid variable selection strategy enhances near-infrared (NIR) spectral analysis by combining variable combination population analysis (VCPA) with genetic algorithms (GA) or iteratively retaining informative variables (IRIV). This approach improves model prediction performance for high-dimensional datasets.

Keywords:
Genetic algorithmIteratively retains informative variablesMultivariate calibrationNear-infrared spectroscopyVariable combination population analysisVariable selection

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Area of Science:

  • Chemometrics
  • Spectroscopy
  • Data Science

Background:

  • High-dimensional near-infrared (NIR) spectral data analysis requires effective variable selection to enhance model predictive capabilities.
  • Existing variable selection methods often face limitations like overfitting, time inefficiency, and high computational demands with numerous variables.

Purpose of the Study:

  • To propose and evaluate a novel hybrid variable selection strategy for high-dimensional NIR spectral datasets.
  • To leverage the strengths of Variable Combination Population Analysis (VCPA), Genetic Algorithm (GA), and Iteratively Retaining Informative Variables (IRIV) while mitigating their individual drawbacks.

Main Methods:

  • A hybrid strategy was developed, starting with a modified VCPA for continuous variable space shrinkage.
  • Further optimization was achieved using Iteratively Retaining Informative Variables (IRIV) and a Genetic Algorithm (GA).
  • The strategy was tested on three NIR datasets against established methods like CARS, GA-iPLS, and VIP-GA.

Main Results:

  • The proposed VCPA-based hybrid strategies (VCPA-GA and VCPA-IRIV) demonstrated significant improvements in model prediction performance.
  • The modified VCPA step proved effective in filtering uninformative variables.
  • Comparative analysis showed superior results compared to other tested variable selection methods.

Conclusions:

  • The VCPA-based hybrid strategy offers a robust and promising approach for variable selection in NIR spectral analysis.
  • This method effectively addresses the challenges posed by high-dimensional datasets.
  • The developed strategies enhance predictive accuracy and model efficiency.