A novel long non-coding RNA-KAT7 is low expressed in colorectal cancer and acts as a tumor suppressor

Qingmei Wang1,2, Rongzhang He1,3, Tan Tan1,2

  • 11Translational Medicine Institute, National & Local Joint Engineering Laboratory for High-throughput Molecular Diagnosis Technology, The First People's Hospital of Chenzhou, University of South China, Chenzhou, 423000 People's Republic of China.

Abstract

Insights

This study identifies lncRNA-KAT7 as a novel long non-coding RNA that is downregulated in colorectal cancer (CRC). Its upregulation inhibits CRC cell proliferation, migration, and tumor growth, suggesting its potential as a diagnostic biomarker and therapeutic target for CRC.

Area of Science:

  • Molecular Biology
  • Oncology
  • Genetics

Background:

  • Abnormal long non-coding RNA (lncRNA) expression is implicated in various cancers.
  • The specific roles of lncRNAs in colorectal cancer (CRC) development remain largely uncharacterized.
  • Identifying novel lncRNAs is crucial for CRC's clinical prevention and treatment.

Purpose of the Study:

  • To investigate the role and mechanism of the novel lncRNA-KAT7 in colorectal cancer.
  • To assess lncRNA-KAT7 as a potential diagnostic biomarker and therapeutic target for CRC.

Main Methods:

  • Compared lncRNA-KAT7 expression in CRC tissues/cells versus normal controls.
  • Analyzed the association between lncRNA-KAT7 expression and CRC clinicopathological features.
  • Evaluated the functional impact of lncRNA-KAT7 on CRC cell proliferation, migration, and invasion in vitro.
  • Assessed the effect of lncRNA-KAT7 on tumor growth in vivo using a xenograft model.
  • Investigated the molecular mechanisms involving key proteins and signaling pathways via Western blot.

Main Results:

  • lncRNA-KAT7 expression was significantly lower in CRC tissues and cells compared to normal controls.
  • Decreased lncRNA-KAT7 expression correlated with adverse clinicopathological features in CRC patients.
  • Upregulation of lncRNA-KAT7 inhibited CRC cell proliferation, migration, and invasion in vitro.
  • lncRNA-KAT7 suppressed tumor growth in vivo.
  • lncRNA-KAT7 modulated the expression of E-cadherin, Vimentin, MMP-2, β-catenin, and NF-κB signaling.

Conclusions:

  • lncRNA-KAT7 acts as a tumor suppressor in colorectal cancer.
  • lncRNA-KAT7 inhibits the malignant phenotype of CRC cells by affecting proliferation, migration, and invasion.
  • lncRNA-KAT7 represents a promising novel diagnostic biomarker and therapeutic target for colorectal cancer.

Related Concept Videos

Cancer-Critical Genes II: Tumor Suppressor Genes01:05

Cancer-Critical Genes II: Tumor Suppressor Genes

Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
9.8K
Loss of Tumor Suppressor Gene Functions01:12

Loss of Tumor Suppressor Gene Functions

Tumor suppressor genes are normal genes that can slow down cell division, repair DNA mistakes, or program the cells for apoptosis in case of irreparable damage. Hence, they play an essential role in preventing the proliferation of damaged cells.
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
6.0K
lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
9.9K
What is Gene Expression?01:42

What is Gene Expression?

Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
196.4K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
24.8K
Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
26.4K