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Updated: Jan 27, 2026

Population and Single-Cell Analysis of Antibiotic Persistence in Escherichia coli
Published on: March 24, 2023
Enhanced antibiotic resistance development from fluoroquinolone persisters after a single exposure to antibiotic
Theresa C Barrett1,2, Wendy W K Mok3,4, Allison M Murawski1,2
1Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA.
Abstract:
Bacterial persisters are able to tolerate high levels of antibiotics and give rise to new populations. Persister tolerance is generally attributed to minimally active cellular processes that prevent antibiotic-induced damage, which has led to the supposition that persister offspring give rise to antibiotic-resistant mutants at comparable rates to normal cells. Using time-lapse microscopy to monitor Escherichia coli populations following ofloxacin treatment, we find that persisters filament extensively and induce impressive SOS responses before returning to a normal appearance. Further, populations derived from fluoroquinolone persisters contain significantly greater quantities of antibiotic-resistant mutants than those from untreated controls. We confirm that resistance is heritable and that the enhancement requires RecA, SOS induction, an opportunity to recover from treatment, and the involvement of error-prone DNA polymerase V (UmuDC). These findings show that fluoroquinolones damage DNA in persisters and that the ensuing SOS response accelerates the development of antibiotic resistance from these survivors.
Insights
Bacterial persisters, tolerant to antibiotics, surprisingly accelerate antibiotic resistance development. Fluoroquinolone treatment damages persister DNA, triggering a response that increases resistant mutant offspring.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Bacterial persisters tolerate antibiotics via low metabolic activity.
- Persister offspring were thought to develop resistance at normal rates.
- Antibiotic tolerance mechanisms remain incompletely understood.
Purpose of the Study:
- Investigate the impact of fluoroquinolone treatment on bacterial persisters.
- Determine if persister populations exhibit altered rates of antibiotic resistance development.
- Elucidate the molecular mechanisms underlying enhanced resistance in persister offspring.
Main Methods:
- Time-lapse microscopy of Escherichia coli populations after ofloxacin exposure.
- Quantification of antibiotic-resistant mutants in populations derived from persisters.
- Genetic analyses involving RecA, SOS induction, and DNA polymerase V (UmuDC).
Main Results:
- Persisters exhibited filamentation and induced significant SOS responses upon fluoroquinolone treatment.
- Populations derived from fluoroquinolone persisters showed significantly higher frequencies of antibiotic resistance.
- Enhanced resistance development required RecA, SOS induction, recovery time, and UmuDC.
Conclusions:
- Fluoroquinolones induce DNA damage in bacterial persisters.
- The SOS response in persisters accelerates the emergence of antibiotic resistance.
- Persister cells are a significant source of antibiotic resistance evolution.
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