Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups

  • 0Cancer Research UK Cambridge Institute and Department of Oncology, Li Ka Shing Centre, University of Cambridge, Cambridge, UK.

|

|

Summary

This summary is machine-generated.

A new statistical model predicts late breast cancer recurrence by analyzing molecular subtypes. This framework identifies high-risk patients, particularly those with ER-positive cancers, enabling better stratification for clinical trials.

Area Of Science

  • Oncology
  • Genomics
  • Biostatistics

Background

  • Understanding systemic spread and late recurrence in breast cancer, especially ER-positive types, is limited by data gaps.
  • Accurate prediction of late relapse is crucial for patient management and therapeutic strategies.

Purpose Of The Study

  • To develop a statistical framework for modeling distinct breast cancer disease stages and competing mortality risks.
  • To generate individual risk-of-recurrence predictions using molecular and clinical data.

Main Methods

  • Applied a statistical model to 3,240 breast cancer patients, including 1,980 with molecular data.
  • Delineated spatiotemporal relapse patterns across immunohistochemical, PAM50, and integrative (IntClust) subtypes.
  • Utilized genomic copy-number alterations and gene expression data for subtype classification.

Main Results

  • Identified four late-recurring integrative subtypes (26% of ER+/HER2- tumors) with high recurrence risk up to 20 years.
  • Defined subgroups of triple-negative breast cancer with distinct late recurrence patterns.
  • Integrative subtypes improved late distant relapse prediction beyond clinical covariates.

Conclusions

  • The developed statistical framework and integrative subtypes enhance prediction of late breast cancer recurrence.
  • Findings support improved patient stratification and the development of biomarker-driven clinical trials.
  • Molecularly defined subtypes offer critical insights into distinct breast cancer progression pathways.

Related Concept Videos

Genomics 02:02

40.3K

Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...

Genomic Imprinting and Inheritance 02:30

37.1K

Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...

Chromatin Position Affects Gene Expression 02:35

24.8K

Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...

Position-effect Variegation 02:32

7.1K

In 1928, a German botanist Emil Heitz observed the moss nuclei with a DNA binding dye. He observed that while some chromatin regions decondense and spread out in the interphase nucleus, others do not. He termed them euchromatin and heterochromatin, respectively. He proposed that the heterochromatin regions reflect a functionally inactive state of the genome. It was later confirmed that heterochromatin is transcriptionally repressed, and euchromatin is transcriptionally active chromatin.

Genome Size and the Evolution of New Genes 03:21

9.1K

While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.

Position and Displacement 01:31

25.4K

The position of an object defines its location relative to a convenient frame of reference at any particular time. A frame of reference is an arbitrary set of axes from which the position and motion of an object are described. Earth is often used as a frame of reference, and we often describe the position of an object as it relates to stationary objects on Earth. For example, a rocket launch could be described in terms of the position of the rocket with respect to Earth as a whole. On the other...