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Updated: Jan 27, 2026

Experimental Analysis of Apoptotic Thymocyte Engulfment by Macrophages
Published on: May 24, 2019
Macrophages engulf apoptotic and primary necrotic thymocytes through similar phosphatidylserine-dependent mechanisms
Zsófia Budai1, László Ujlaky-Nagy2, Gréta Nikoletta Kis3
1Department of Biochemistry and Molecular Biology Faculty of Medicine University of Debrecen Hungary.
Abstract:
One of the major roles of professional phagocytes is the removal of dead cells in the body. We know less about the clearance of necrotic cells than apoptotic cell phagocytosis, despite the fact that both types of dead cells need to be cleared together and necrotic cells appear often in pathological settings. In the present study, we examined phagocytosis of heat- or H2O2-killed necrotic and apoptotic thymocytes by mouse bone marrow-derived macrophages (BMDMs) in vitro and found that the two cell types are engulfed at equal efficiency and compete with each other when added together to BMDMs. Phagocytosis of both apoptotic and necrotic thymocytes was decreased by (a) blocking phosphatidylserine on the surface of dying cells; (b) inhibition of Mer tyrosine kinase, Tim-4, integrin β3 receptor signaling, or Ras-related C3 botulinum toxin substrate 1 activity; or (c) using BMDMs deficient for transglutaminase 2. Stimulation of liver X, retinoid X, retinoic acid or glucocorticoid nuclear receptors in BMDMs enhanced not only apoptotic, but also necrotic cell uptake. Electron microscopic analysis of the engulfment process revealed that the morphology of phagosomes and the phagocytic cup formed during the uptake of dying thymocytes is similar for apoptotic and necrotic cells. Our data indicate that apoptotic and necrotic cells are cleared via the same mechanisms, and removal of necrotic cells in vivo can be facilitated by molecules known to enhance the uptake of apoptotic cells.
Insights
Professional phagocytes clear both apoptotic and necrotic cells equally. Key signaling pathways and receptors, like Mer tyrosine kinase and Tim-4, are crucial for this process, suggesting shared clearance mechanisms for different cell death types.
Area of Science:
- Immunology
- Cell Biology
- Pathology
Background:
- Professional phagocytes are crucial for removing dead cells.
- Clearance mechanisms for necrotic cells are less understood than for apoptotic cells, despite their importance in pathological conditions.
- Both apoptotic and necrotic cells require efficient removal to prevent tissue damage and inflammation.
Purpose of the Study:
- To investigate the phagocytosis of necrotic and apoptotic thymocytes by macrophages.
- To identify the molecular mechanisms involved in the clearance of necrotic cells.
- To compare the engulfment processes of apoptotic and necrotic cells.
Main Methods:
- Utilized mouse bone marrow-derived macrophages (BMDMs) for in vitro phagocytosis assays.
- Employing heat- or H2O2-killed thymocytes as apoptotic and necrotic cell models.
- Investigated the role of specific signaling pathways (Mer tyrosine kinase, integrin β3, Ras-related C3 botulinum toxin substrate 1), receptors (Tim-4), and enzymes (transglutaminase 2) in phagocytosis.
- Examined the effect of nuclear receptor stimulation (liver X, retinoid X, retinoic acid, glucocorticoid) on cell uptake.
- Conducted electron microscopy to analyze phagosome and phagocytic cup morphology.
Main Results:
- BMDMs efficiently engulfed both apoptotic and necrotic thymocytes at equal rates, with competition observed when both were present.
- Phagocytosis of both cell types was reduced by blocking phosphatidylserine, inhibiting Mer tyrosine kinase, Tim-4, integrin β3, or Ras-related C3 botulinum toxin substrate 1 activity, or by using transglutaminase 2-deficient BMDMs.
- Stimulation of specific nuclear receptors enhanced the uptake of both apoptotic and necrotic cells.
- Electron microscopy revealed similar phagosome and phagocytic cup morphologies for both apoptotic and necrotic cell engulfment.
Conclusions:
- Apoptotic and necrotic cells are cleared by macrophages through largely overlapping mechanisms.
- The same molecular pathways and receptors mediate the uptake of both apoptotic and necrotic cells.
- Enhancing the uptake of apoptotic cells may also improve the clearance of necrotic cells in vivo, offering therapeutic potential.
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