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Updated: Jan 27, 2026

Zika Virus Specific Diagnostic Epitope Discovery
Published on: December 12, 2017
New epitopes in ovalbumin provide insights for cancer neoepitopes
Sukrut Hemant Karandikar1, John Sidney2, Alessandro Sette2
1Department of Immunology, University of Connecticut School of Medicine, Farmington, Connecticut, USA.
Abstract:
MHC I-restricted epitopes of chicken ovalbumin (OVA) were originally identified using CD8 T cells as probes. Here, using bioinformatics tools, we identify four additional epitopes in OVA in addition to a cryptic epitope. Each new epitope is presented in vivo, as deduced from the lack of CD8 response to it in OVA-transgenic mice. In addition, CD8 responses to the known and novel epitopes are examined in C57BL/6 mice exposed to the OVA-expressing tumor E.G7 in several ways. No responses to any epitope including SIINFEKL are detected in mice with growing E.G7 or mice immunized with the tumor. Only in E.G7-bearing mice treated with an anti-CTLA4 antibody which depletes tumor-infiltrating regulatory T cells, CD8 responses to SIINFEKL and the novel epitope EKYNLTSVL are detected. Finally, all epitopes fails to treat mice with pre-existing tumors. These observations force an important re-consideration of the common assumptions about the therapeutic value of neoepitopes detected by CD8 responses in tumor-bearing hosts.
Insights
This study identified new chicken ovalbumin (OVA) epitopes but found CD8 T cell responses were limited in tumor models. Therapeutic strategies targeting neoepitopes require re-evaluation for cancer treatment.
Area of Science:
- Immunology
- Oncology
- Bioinformatics
Background:
- MHC class I-restricted epitopes of chicken ovalbumin (OVA) were initially identified using CD8 T cells.
- Understanding T cell epitope presentation is crucial for cancer immunotherapy.
Purpose of the Study:
- To identify novel OVA epitopes using bioinformatics.
- To investigate CD8 T cell responses to known and novel OVA epitopes in a tumor model.
- To assess the therapeutic potential of these epitopes in established tumors.
Main Methods:
- Bioinformatic analysis to identify OVA epitopes.
- In vivo assessment of CD8 T cell responses in OVA-transgenic and E.G7 tumor-bearing C57BL/6 mice.
- Treatment of tumor-bearing mice with anti-CTLA4 antibody.
Main Results:
- Four new OVA epitopes and one cryptic epitope were identified.
- No CD8 T cell responses were detected in mice with growing E.G7 tumors or those immunized with the tumor.
- CD8 T cell responses to SIINFEKL and EKYNLTSVL were observed only after anti-CTLA4 treatment.
- All identified epitopes failed to treat established tumors.
Conclusions:
- The therapeutic efficacy of neoepitopes identified by CD8 responses in tumor-bearing hosts needs critical reassessment.
- Tumor microenvironment, particularly regulatory T cells, significantly impacts T cell responses to epitopes.
- Novel epitope identification alone does not guarantee therapeutic success in cancer treatment.
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