Related Experiment Video
Updated: Jan 27, 2026

Vascular Casting of Adult and Early Postnatal Mouse Lungs for Micro-CT Imaging
Published on: June 20, 2020
Ethanol fixation method for heart and lung imaging in micro-CT.
Matej Patzelt1,2,3, Jana Mrzilkova4,5,6, Jan Dudak1,2,7,8
1Specialized Laboratory of Experimental Imaging, Third Faculty of Medicine, Charles University, Prague, Czech Republic.
Simple ethanol fixation enhances soft tissue imaging in micro-computed tomography (micro-CT) without contrast agents. Ascending ethanol concentrations provide the best detailed visualization of organs for micro-CT analysis.
Area of Science:
- Biomedical Imaging
- Radiology
- Histology
Background:
- Micro-computed tomography (micro-CT) imaging of soft tissues is limited by low intrinsic contrast.
- Enhancing soft tissue visibility in micro-CT typically requires contrast agents, which can be complex or unavailable for ex vivo studies.
Purpose of the Study:
- To develop a straightforward staining method for ex vivo soft tissue imaging using micro-CT.
- To achieve improved contrast without relying on traditional contrast agents.
Main Methods:
- Mouse hearts and lungs (n=30) were utilized for the study.
- Organs underwent fixation in 97% ethanol, 50% ethanol, or a series of ascending ethanol concentrations.
- Micro-CT imaging was performed at various time points (72, 168, 336 hours) and compared to native samples.
Main Results:
- Ethanol fixation consistently enhanced contrast across all tested methods.
- Fixation in 97% ethanol provided rapid contrast but led to significant tissue hardening.
- Fixation in 50% ethanol showed delayed contrast enhancement and poorer detail visualization.
- A graded series of ascending ethanol concentrations yielded optimal results, revealing intricate details without tissue damage.
Conclusions:
- Simple ethanol fixation is an effective method for improving soft tissue contrast in micro-CT.
- Fixing soft tissue samples in a series of ascending ethanol concentrations provides the most favorable outcomes for detailed imaging.
Related Concept Videos
Imaging Studies I: CT and MRI
Description of the Procedures
Computed Tomography (CT) scan:
Computed Tomography (CT) scans use X-ray technology to generate detailed images of bones, organs, and tissues. During the scan, the patient lies on a moving table...
Imaging Studies for Cardiovascular System V: CT
Imaging Studies for Cardiovascular System VI: Calcium -Scoring CT
Fixation and Sectioning
The simplest type of preparation is the wet mount, in which the specimen is placed in a drop of liquid on the slide. A liquid specimen can be directly deposited on the slide using a dropper. Solid specimens, such as skin scraping, can be placed on the slide before adding a drop of liquid to prepare the wet mount. Sometimes the liquid is simply water, but stains are often added...
Lung Capacity
Carbon-dioxide Fixation

