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Updated: Jan 27, 2026

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The Circadian Clock Protein CRY1 Is a Negative Regulator of HIF-1α
Elitsa Y Dimova1, Mirza Jakupovic2, Kateryna Kubaichuk1
1Faculty of Biochemistry and Molecular Medicine and Biocenter Oulu, University of Oulu, P.O. Box 3000, 90014 Oulu, Finland.
Abstract:
The circadian clock and the hypoxia-signaling pathway are regulated by an integrated interplay of positive and negative feedback limbs that incorporate energy homeostasis and carcinogenesis. We show that the negative circadian regulator CRY1 is also a negative regulator of hypoxia-inducible factor (HIF). Mechanistically, CRY1 interacts with the basic-helix-loop-helix domain of HIF-1α via its tail region. Subsequently, CRY1 reduces HIF-1α half-life and binding of HIFs to target gene promoters. This appeared to be CRY1 specific because genetic disruption of CRY1, but not CRY2, affected the hypoxia response. Furthermore, CRY1 deficiency could induce cellular HIF levels, proliferation, and migration, which could be reversed by CRISPR/Cas9- or short hairpin RNA-mediated HIF knockout. Altogether, our study provides a mechanistic explanation for genetic association studies linking a disruption of the circadian clock with hypoxia-associated processes such as carcinogenesis.
Insights
The circadian regulator CRY1 negatively controls the hypoxia-inducible factor (HIF) pathway. CRY1 deficiency increases HIF levels, promoting cell proliferation and migration, linking circadian disruption to cancer.
Area of Science:
- Molecular Biology
- Cellular Biology
- Cancer Research
Background:
- The circadian clock and hypoxia signaling are crucial for cellular homeostasis.
- Dysregulation of these pathways is implicated in diseases like cancer.
- The interplay between circadian regulators and hypoxia-inducible factors (HIFs) is not fully understood.
Purpose of the Study:
- To investigate the role of the circadian regulator CRY1 in the hypoxia-signaling pathway.
- To elucidate the molecular mechanism by which CRY1 affects HIF activity.
- To explore the implications of CRY1-HIF interaction in cellular processes relevant to carcinogenesis.
Main Methods:
- Investigated CRY1 interaction with HIF-1α using co-immunoprecipitation and domain mapping.
- Assessed the effect of CRY1 on HIF-1α protein stability and promoter binding.
- Utilized genetic disruption of CRY1 (CRISPR/Cas9, shRNA) and assessed cellular phenotypes (proliferation, migration) and HIF levels.
- Examined the specificity of CRY1's role by comparing with CRY2.
Main Results:
- CRY1 directly interacts with HIF-1α, reducing its half-life and promoter binding.
- Genetic disruption of CRY1, but not CRY2, significantly impacts the hypoxia response.
- CRY1 deficiency leads to elevated cellular HIF levels, increased proliferation, and migration.
- HIF knockout reversed the pro-proliferative and migratory effects observed in CRY1-deficient cells.
Conclusions:
- CRY1 acts as a negative regulator of the hypoxia-signaling pathway by targeting HIF-1α.
- This study provides a mechanistic link between circadian clock disruption and hypoxia-driven processes.
- Findings offer insights into the molecular basis of associations between circadian clock dysfunction and carcinogenesis.
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Published on: July 4, 2018
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