Related Experiment Video
Updated: Jan 27, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Function-first ligandomics for ocular vascular research and drug target discovery.
Xin Rong1, Hong Tian2, Liu Yang3
1Bascom Palmer Eye Institute, Department of Ophthalmology, University of Miami Miller School of Medicine, Miami, FL, USA; Department of Ophthalmology, Peking University First Hospital, Beijing, China.
New ligandomics approaches identify novel targets for ocular vascular diseases beyond anti-VEGF therapy. This method efficiently finds disease-specific factors for better treatment of conditions like wet age-related macular degeneration (AMD) and diabetic macular edema (DME).
Area of Science:
- Ophthalmology
- Molecular Biology
- Drug Discovery
Background:
- Ocular vascular diseases like wet AMD, DME, and PDR involve neovascularization and leakage.
- Current anti-VEGF therapies show limited efficacy and are not approved for all ocular indications.
- Novel therapies targeting VEGF-independent pathways are crucial for unmet clinical needs.
Purpose of the Study:
- To develop novel therapies for ocular vascular diseases by identifying new drug targets.
- To overcome limitations of current anti-VEGF treatments by exploring alternative or combination therapies.
- To efficiently characterize functional activity and therapeutic potential of identified ligands.
Main Methods:
- Developed the first paradigm of ligandomics for global and disease-selective ligand mapping.
- Combined ligandomics with "function-first" and/or "therapy-first" analyses.
- Utilized the unique advantages of the eye and extracellular ligands for analysis.
Main Results:
- Demonstrated a novel approach to systematically and reliably delineate disease-selective angiogenic or vascular leakage factors.
- Showcased the ability to efficiently characterize functional activity, disease selectivity, and therapeutic potential of ligands.
- Highlighted the potential for high efficacy, minimal side effects, and wide therapeutic windows with targeted therapies.
Conclusions:
- Function- or therapy-first ligandomics offer a powerful strategy for ocular vascular research.
- This innovative approach significantly facilitates the development of ligand-guided targeted anti-angiogenic therapies.
- The findings pave the way for more effective treatments for various human eye vascular diseases.
Related Concept Videos
Drug Discovery: Overview
Targets for Drug Action: Overview
Receptors are either membrane-spanning or intracellular proteins, which upon binding a ligand, get activated and transmit the signal downstream to elicit a response. Drugs bind receptors, either mimicking the action of endogenous ligands or blocking the receptor activity to bring about a modified response. Nearly 35% of approved drugs target the G...
Seedless Vascular Plants
Vascular Spasm
Vascular Resistance
The primary determinants of vascular resistance are vessel diameter, blood viscosity, and vessel length. Among these, vessel diameter plays the most significant role due to the fourth power relationship described by...
Overview of the Vascular System

