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Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Micrococcus aloeverae - A Rare Cause of Peritoneal Dialysis-Related Peritonitis Confirmed by 16S rRNA Gene Sequencing
Su Hyun Song1, Hong Sang Choi1, Seong Kwon Ma1
1Department of Internal Medicine, Chonnam National University Medical School.
Abstract:
The number of patients receiving peritoneal dialysis has increased worldwide. Herein, we report the first case to our knowledge of continuous ambulatory peritoneal dialysis (CAPD) peritonitis caused by Micrococcus aloeverae, which was initially reported to be caused by Micrococcus luteus in the dialysate culture report but later identified by 16S ribosomal ribonucleic acid (rRNA) gene sequencing as M. aloeverae. A 59-year-old woman visited the emergency room due to abdominal pain. She was hospitalized with CAPD peritonitis. The patient initially responded to empirical antibiotic treatment comprising intraperitoneal cefazolin (15 mg/kg/day) and ceftazidime (1 g/day); however, the leukocyte count of dialysate effluent increased again. M. luteus was isolated four times from peritoneal dialysate cultures. We treated the patient with intraperitoneal administration of vancomycin (2 g loading, followed by 1 g every 7 days) but needed to switch from CAPD to temporary hemodialysis. We analyzed the 16S rRNA sequence to confirm the exact causative organism, and the results revealed that the organism was M. aloeverae. Because M. aloeverae and M. luteus have sequence similarity, 16S rRNA sequencing is a useful method to distingush them.
Insights
Continuous ambulatory peritoneal dialysis (CAPD) peritonitis can be caused by Micrococcus aloeverae, a rare pathogen. 16S rRNA gene sequencing is crucial for accurate identification, distinguishing it from similar bacteria like Micrococcus luteus.
Area of Science:
- Microbiology
- Nephrology
- Infectious Diseases
Background:
- Peritoneal dialysis (PD) is an increasingly common treatment for kidney failure worldwide.
- Peritonitis, an infection of the peritoneum, is a serious complication of PD.
- Accurate identification of causative pathogens is essential for effective treatment.
Purpose of the Study:
- To report the first known case of continuous ambulatory peritoneal dialysis (CAPD) peritonitis caused by Micrococcus aloeverae.
- To highlight the diagnostic challenges in differentiating M. aloeverae from M. luteus.
- To emphasize the utility of 16S ribosomal ribonucleic acid (rRNA) gene sequencing in identifying Micrococcus species.
Main Methods:
- Case report of a 59-year-old female patient with CAPD peritonitis.
- Initial diagnosis based on dialysate cultures identifying Micrococcus luteus.
- Definitive identification of Micrococcus aloeverae using 16S rRNA gene sequencing.
Main Results:
- The patient presented with abdominal pain and CAPD peritonitis.
- Initial empirical antibiotic treatment was partially effective, but infection recurred.
- Dialysate cultures repeatedly yielded M. luteus, but 16S rRNA sequencing confirmed M. aloeverae.
- Treatment required vancomycin and temporary switch to hemodialysis.
Conclusions:
- Micrococcus aloeverae is a rare but potential cause of CAPD peritonitis.
- Distinguishing M. aloeverae from M. luteus can be challenging with standard culture methods.
- 16S rRNA gene sequencing is a valuable tool for accurate identification of these closely related bacteria.
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