Related Experiment Video
Updated: Jan 26, 2026

Cryo-EM and Single-Particle Analysis with Scipion
Published on: May 29, 2021
Cryo-EM Structure of a Begomovirus Geminate Particle
Xiongbiao Xu1,2, Qing Zhang3,4, Jian Hong5
1State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China. xiongbiaox1988@126.com.
Researchers determined the structure of tobacco curly shoot virus (TbCSV), revealing how its DNA genome interacts with coat proteins to form the characteristic geminate particle structure essential for assembly.
Area of Science:
- Plant virology
- Structural biology
- Molecular biology
Background:
- Tobacco curly shoot virus (TbCSV), a monopartite begomovirus, causes significant leaf curl diseases in tomato and tobacco plants.
- TbCSV is often associated with betasatellite molecules, exacerbating disease severity.
Purpose of the Study:
- To elucidate the structural basis of TbCSV particle formation.
- To understand the role of the viral DNA genome in the assembly of the geminate structure.
Main Methods:
- Single-particle cryo-electron microscopy (cryo-EM) was employed to determine the TbCSV particle structure.
- High-resolution (3.57 Å) structural analysis was performed to visualize molecular interactions.
Main Results:
- The characteristic geminate architecture of the TbCSV particle was confirmed.
- Single-stranded DNA was observed to be bound to each coat protein (CP).
- Interactions between coat proteins (CP⁻CP) and between DNA and coat proteins (DNA⁻CP) were partially resolved, showing a CP⁻DNA⁻CP pattern.
Conclusions:
- The genomic DNA is crucial for mediating stable CP⁻CP and DNA⁻CP interactions.
- This DNA-mediated interface is essential for the proper assembly of the geminate TbCSV particle.
Related Concept Videos
Subatomic Particles
Interaction of EM Radiation with Matter: Spectroscopy
The Nucleosome Core Particle
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
The Nucleosome Core Particle
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Spin–Spin Coupling: Two-Bond Coupling (Geminal Coupling)
The central atom need not be NMR-active because its electrons are affected by the electron polarization of the spin-active atoms. However, spin information is transmitted less effectively than in one-bond coupling, and 2J values are usually weaker than 1J values. The energy of...
Structures of Solids

