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Related Concept Videos

Chromatin Packaging02:21

Chromatin Packaging

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Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter? 
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
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Chromatin Packaging01:32

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Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
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Chromatin Packaging02:21

Chromatin Packaging

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No description available
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
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Inheritance of Chromatin Structures03:17

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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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Spreading of Chromatin Modifications02:25

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The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
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Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C
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Dynamic chromatin organization in the cell.

Eloise I Prieto1,2, Kazuhiro Maeshima1,3

  • 1National Institute of Genetics, Mishima, Shizuoka, Japan kmaeshim@nig.ac.jp prieto.eloise@mbb.upd.edu.ph.

Essays in Biochemistry
|April 11, 2019
PubMed
Summary
This summary is machine-generated.

Chromatin organization in eukaryotic cells is crucial for DNA function. Recent research challenges the traditional 30-nm fiber model, favoring a dynamic, fluid-like structure based on the 10-nm fiber.

Keywords:
chromatinchromatin fiberlive-cell imagingnucleosomesuper-resolution microscopy

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Chromatin Immunoprecipitation ChIP to Assay Dynamic Histone Modification in Activated Gene Expression in Human Cells
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Area of Science:

  • Molecular Biology
  • Cell Biology
  • Genetics

Background:

  • Genomic DNA organization into nuclear chromatin is essential for eukaryotic cell function.
  • The precise mechanisms of chromatin organization remain incompletely understood.
  • The classical view posits DNA packaging via a regular 30-nm chromatin fiber hierarchy.

Purpose of the Study:

  • To review recent advancements in understanding chromatin structure.
  • To highlight the ongoing paradigm shift in chromatin folding mechanisms.
  • To contrast the traditional model with emerging dynamic perspectives.

Main Methods:

  • Literature review of recent research on chromatin structure.
  • Analysis of experimental evidence supporting different chromatin models.
  • Synthesis of findings to illustrate the evolution of chromatin structure concepts.

Main Results:

  • The traditional 30-nm chromatin fiber model is being challenged by new evidence.
  • A fluid-like chromatin model, based on an irregular 10-nm fiber, is gaining prominence.
  • Recent studies indicate a more dynamic and less hierarchical chromatin organization.

Conclusions:

  • The understanding of chromatin organization is shifting from a static, hierarchical model to a dynamic, fluid-like one.
  • The 10-nm fiber plays a more central role in dynamic chromatin structures than previously thought.
  • Further research is needed to fully elucidate the mechanisms of dynamic chromatin folding.