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PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins
Published on: July 2, 2010
Testis-specific calcium-binding protein CBP86-IV (CABYR) binds with phosphoglycerate kinase 2 in vitro and in vivo
Shulin Shen1, Dongrun Li1, Jihong Liang1
1Department of Andrology, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Abstract:
The investigation of the interacting proteins with testis-specific calcium-binding protein CBP86-IV (CABYR) was carried out in human spermatozoa. The total RNA from human spermatozoa was extracted, and the ORF sequence of TSCBP86-IV gene was amplified and cloned into expression vector pET-28a. The positive recombinant clones were transformed into Escherichia coli strain BL21 (DE3) to express fusion protein. Then, co-immunoprecipitation (Co-IP) of TSCBP86-IV was performed in BL21 cell lysate expressing CBP86-IV recombinant protein. The immune complex was captured and identified by mass spectrometry. Reverse Co-IP of potential interacting proteins was performed in human sperm cell lysate. The potential protein interactions were confirmed by yeast two-hybrid system. Thirteen proteins were successfully identified in immune complex from E. coli cell lysate. Phosphoglycerate kinase 2 (PGK2) further showed positive results both in reverse Co-IP and yeast two-hybrid experiments and was confirmed to be interacted with TSCBP86-IV in human sperm cells.
Insights
Researchers identified proteins interacting with testis-specific calcium-binding protein CBP86-IV (CABYR) in human sperm. Phosphoglycerate kinase 2 (PGK2) was confirmed to interact with CABYR, advancing our understanding of sperm function.
Area of Science:
- Reproductive Biology
- Molecular Biology
- Proteomics
Background:
- Testis-specific calcium-binding protein CBP86-IV (CABYR) plays a role in human spermatozoa.
- Understanding protein interactions is crucial for elucidating CABYR function in sperm.
Purpose of the Study:
- To identify proteins that interact with CABYR in human spermatozoa.
- To confirm the interaction between CABYR and identified proteins using multiple experimental approaches.
Main Methods:
- Recombinant expression of CABYR in Escherichia coli.
- Co-immunoprecipitation (Co-IP) assays in E. coli and human sperm lysates.
- Mass spectrometry for protein identification.
- Yeast two-hybrid system for interaction confirmation.
Main Results:
- Thirteen potential interacting proteins were identified in E. coli lysate.
- Phosphoglycerate kinase 2 (PGK2) showed positive interaction results in both reverse Co-IP and yeast two-hybrid assays.
- The interaction between CABYR and PGK2 was confirmed in human sperm cells.
Conclusions:
- CABYR interacts with PGK2 in human sperm.
- This interaction may be significant for sperm function and male fertility.
- Further research into CABYR-PGK2 complex functions is warranted.
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