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Published on: January 5, 2018
Cell-specific CRISPR-Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins
Mareike D Hoffmann1,2, Sabine Aschenbrenner1,2, Stefanie Grosse1
1Synthetic Biology Group, Institute for Pharmacy and Biotechnology (IPMB) and Center for Quantitative Analysis of Molecular and Cellular Biosystems (BioQuant), University of Heidelberg, Heidelberg 69120, Germany.
Abstract:
The rapid development of CRISPR-Cas technologies brought a personalized and targeted treatment of genetic disorders into closer reach. To render CRISPR-based therapies precise and safe, strategies to confine the activity of Cas(9) to selected cells and tissues are highly desired. Here, we developed a cell type-specific Cas-ON switch based on miRNA-regulated expression of anti-CRISPR (Acr) proteins. We inserted target sites for miR-122 or miR-1, which are abundant specifically in liver and cardiac muscle cells, respectively, into the 3'UTR of Acr transgenes. Co-expressing these with Cas9 and sgRNAs resulted in Acr knockdown and released Cas9 activity solely in hepatocytes or cardiomyocytes, while Cas9 was efficiently inhibited in off-target cells. We demonstrate control of genome editing and gene activation using a miR-dependent AcrIIA4 in combination with different Streptococcus pyogenes (Spy)Cas9 variants (full-length Cas9, split-Cas9, dCas9-VP64). Finally, to showcase its modularity, we adapted our Cas-ON system to the smaller and more target-specific Neisseria meningitidis (Nme)Cas9 orthologue and its cognate inhibitors AcrIIC1 and AcrIIC3. Our Cas-ON switch should facilitate cell-specific activity of any CRISPR-Cas orthologue, for which a potent anti-CRISPR protein is known.
Insights
Researchers developed a novel CRISPR-Cas system that precisely targets gene editing in specific cells. This Cas-ON switch uses microRNAs to control anti-CRISPR proteins, enhancing safety for genetic therapies.
Area of Science:
- Molecular Biology
- Gene Editing Technologies
- Biotechnology
Background:
- CRISPR-Cas technologies offer promising avenues for personalized genetic disorder treatments.
- Ensuring the precision and safety of CRISPR-based therapies necessitates strategies for localized Cas activity.
- Confining Cas activity to specific cells and tissues is crucial for therapeutic applications.
Purpose of the Study:
- To develop a cell type-specific Cas-ON switch for precise CRISPR-Cas activity control.
- To engineer a system that restricts CRISPR-Cas9 function to targeted cells, enhancing therapeutic safety.
- To create a modular platform adaptable to various CRISPR-Cas orthologues.
Main Methods:
- Designed a Cas-ON switch utilizing miRNA-regulated expression of anti-CRISPR (Acr) proteins.
- Inserted specific microRNA target sites (miR-122, miR-1) into Acr transgene 3'UTRs for cell-specific regulation.
- Demonstrated functionality with Streptococcus pyogenes (Spy)Cas9 and Neisseria meningitidis (Nme)Cas9 orthologues.
Main Results:
- Achieved cell-specific Cas9 activity in hepatocytes and cardiomyocytes via Acr knockdown.
- Successfully inhibited Cas9 activity in off-target cells, ensuring safety.
- Demonstrated control over genome editing and gene activation using the miR-dependent AcrIIA4 system.
- Showcased system modularity by adapting it to NmeCas9 and its inhibitors.
Conclusions:
- The developed Cas-ON switch enables precise, cell-specific CRISPR-Cas activity.
- This system enhances the safety and efficacy of CRISPR-based gene therapies.
- The modular design facilitates application with diverse CRISPR-Cas orthologues and anti-CRISPR proteins.
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