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Updated: Jan 26, 2026

Gene Knock-in by CRISPR/Cas9 and Cell Sorting in Macrophage and T Cell Lines
Published on: November 13, 2021
CRISPR-SONIC: targeted somatic oncogene knock-in enables rapid in vivo cancer modeling
Haiwei Mou1, Deniz M Ozata1, Jordan L Smith1
1RNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Abstract:
CRISPR/Cas9 has revolutionized cancer mouse models. Although loss-of-function genetics by CRISPR/Cas9 is well-established, generating gain-of-function alleles in somatic cancer models is still challenging because of the low efficiency of gene knock-in. Here we developed CRISPR-based Somatic Oncogene kNock-In for Cancer Modeling (CRISPR-SONIC), a method for rapid in vivo cancer modeling using homology-independent repair to integrate oncogenes at a targeted genomic locus. Using a dual guide RNA strategy, we integrated a plasmid donor in the 3'-UTR of mouse β-actin, allowing co-expression of reporter genes or oncogenes from the β-actin promoter. We showed that knock-in of oncogenic Ras and loss of p53 efficiently induced intrahepatic cholangiocarcinoma in mice. Further, our strategy can generate bioluminescent liver cancer to facilitate tumor imaging. This method simplifies in vivo gain-of-function genetics by facilitating targeted integration of oncogenes.
Insights
CRISPR-SONIC enables efficient in vivo gene knock-in for cancer modeling. This new method rapidly integrates oncogenes into mouse models, advancing cancer research and therapeutic development.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- CRISPR/Cas9 technology has transformed cancer mouse models.
- Generating gain-of-function alleles in somatic cancer models using CRISPR/Cas9 is challenging due to low gene knock-in efficiency.
Purpose of the Study:
- To develop a novel CRISPR-based method for efficient in vivo oncogene integration in somatic cancer models.
- To establish a rapid and effective approach for generating gain-of-function cancer models.
Main Methods:
- Developed CRISPR-based Somatic Oncogene kNock-In for Cancer Modeling (CRISPR-SONIC).
- Utilized homology-independent repair for targeted oncogene integration.
- Employed a dual guide RNA strategy to integrate a plasmid donor into the mouse β-actin 3'-UTR for co-expression.
Main Results:
- Successfully demonstrated efficient knock-in of oncogenic Ras and p53 loss in mice.
- Induced intrahepatic cholangiocarcinoma in mouse models.
- Generated bioluminescent liver cancer for enhanced tumor imaging capabilities.
Conclusions:
- CRISPR-SONIC simplifies in vivo gain-of-function genetics for cancer modeling.
- This method facilitates targeted oncogene integration, accelerating the development of novel cancer models.
- The strategy offers a powerful tool for studying oncogene-driven cancers and for therapeutic imaging.
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