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Updated: Jan 26, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Population-Based Analysis of DNA Damage and Epigenetic Effects of 1,3-Butadiene in the Mouse
Lauren Lewis1, Barbara Borowa-Mazgaj2, Aline de Conti2
1Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences , Texas A&M University , College Station , Texas 77843 , United States.
Abstract:
Metabolism of 1,3-butadiene, a known human and rodent carcinogen, results in formation of reactive epoxides, a key event in its carcinogenicity. Although mice exposed to 1,3-butadiene present DNA adducts in all tested tissues, carcinogenicity is limited to liver, lung, and lymphoid tissues. Previous studies demonstrated that strain- and tissue-specific epigenetic effects in response to 1,3-butadiene exposure may influence susceptibly to DNA damage and serve as a potential mechanism of tissue-specific carcinogenicity. This study aimed to investigate interindividual variability in the effects of 1,3-butadiene using a population-based mouse model. Male mice from 20 Collaborative Cross strains were exposed to 0 or 635 ppm 1,3-butadiene by inhalation (6 h/day, 5 days/week) for 2 weeks. We evaluated DNA damage and epigenetic effects in target (lung and liver) and nontarget (kidney) tissues of 1,3-butadiene-induced carcinogenesis. DNA damage was assessed by measuring N-7-(2,3,4-trihydroxybut-1-yl)-guanine (THB-Gua) adducts. To investigate global histone modification alterations, we evaluated the trimethylation and acetylation of histones H3 and H4 across tissues. Changes in global cytosine DNA methylation were evaluated from the levels of methylation of LINE-1 and SINE B1 retrotransposons. We quantified the degree of variation across strains, deriving a chemical-specific human variability factor to address population variability in carcinogenic risk, which is largely ignored in current cancer risk assessment practice. Quantitative trait locus mapping identified four candidate genes related to chromatin remodeling whose variation was associated with interstrain susceptibility. Overall, this study uses 1,3-butadiene to demonstrate how the Collaborative Cross mouse population can be used to identify the mechanisms for and quantify the degree of interindividual variability in tissue-specific effects that are relevant to chemically induced carcinogenesis.
Insights
1,3-butadiene exposure causes DNA damage, but cancer risk varies by tissue and individual. This study used diverse mice to reveal genetic and epigenetic factors influencing this variability, aiding cancer risk assessment.
Area of Science:
- Environmental Toxicology
- Carcinogenesis
- Epigenetics
Background:
- 1,3-butadiene is a human carcinogen forming reactive epoxides.
- While DNA adducts are widespread, carcinogenicity is tissue-specific (liver, lung, lymphoid).
- Strain- and tissue-specific epigenetic effects may explain susceptibility to 1,3-butadiene-induced damage.
Purpose of the Study:
- Investigate interindividual variability in 1,3-butadiene effects using a population-based mouse model.
- Identify mechanisms driving tissue-specific carcinogenicity and quantify population variability.
- Develop a chemical-specific human variability factor for improved cancer risk assessment.
Main Methods:
- Exposed male mice from 20 Collaborative Cross strains to 1,3-butadiene (635 ppm) for 2 weeks.
- Assessed DNA damage via N-7-(2,3,4-trihydroxybut-1-yl)-guanine (THB-Gua) adducts.
- Evaluated global histone modifications (H3/H4 trimethylation/acetylation) and DNA methylation (LINE-1, SINE B1).
Main Results:
- Quantified interstrain variation in DNA damage and epigenetic alterations across tissues (lung, liver, kidney).
- Identified four candidate genes involved in chromatin remodeling linked to interstrain susceptibility.
- Derived a chemical-specific human variability factor from observed population variability.
Conclusions:
- The Collaborative Cross mouse population effectively models interindividual variability in chemical carcinogenesis.
- Genetic and epigenetic factors significantly contribute to tissue-specific susceptibility to 1,3-butadiene.
- This approach provides a framework for quantifying population variability in carcinogenic risk assessment.
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