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Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
Max L Nibert1, Humberto J Debat2, Austin R Manny3
1Department of Microbiology and Program in Virology, Harvard Medical School, Boston, MA 02115, USA. mnibert@hms.harvard.edu.
Abstract:
Fungi constituting the Entomophthora muscae species complex (members of subphylum Entomophthoromycotina, phylum Zoopagamycota) commonly kill their insect hosts and manipulate host behaviors in the process. In this study, we made use of public transcriptome data to identify and characterize eight new species of mitoviruses associated with several different E. muscae isolates. Mitoviruses are simple RNA viruses that replicate in host mitochondria and are frequently found in more phylogenetically apical fungi (members of subphylum Glomeromyoctina, phylum Mucoromycota, phylum Basidiomycota and phylum Ascomycota) as well as in plants. E. muscae is the first fungus from phylum Zoopagomycota, and thereby the most phylogenetically basal fungus, found to harbor mitoviruses to date. Multiple UGA (Trp) codons are found not only in each of the new mitovirus sequences from E. muscae but also in mitochondrial core-gene coding sequences newly assembled from E. muscae transcriptome data, suggesting that UGA (Trp) is not a rarely used codon in the mitochondria of this fungus. The presence of mitoviruses in these basal fungi has possible implications for the evolution of these viruses.
Insights
Eight new mitoviruses were discovered in the fungus Entomophthora muscae, a species complex known for insect host manipulation. This finding expands our understanding of mitovirus distribution and evolution in fungi.
Area of Science:
- Mycology
- Virology
- Evolutionary Biology
Background:
- The Entomophthora muscae species complex comprises fungi that infect and manipulate insect hosts.
- Mitoviruses are RNA viruses found in host mitochondria, typically in phylogenetically advanced fungi and plants.
Purpose of the Study:
- To identify and characterize novel mitoviruses within E. muscae isolates.
- To investigate the presence of mitoviruses in phylogenetically basal fungi.
Main Methods:
- Analysis of public transcriptome data from E. muscae isolates.
- Identification and characterization of new mitovirus sequences.
- Assembly of mitochondrial core-gene coding sequences.
Main Results:
- Eight new species of mitoviruses were identified in E. muscae.
- E. muscae represents the first fungus from the phylum Zoopagomycota found to harbor mitoviruses.
- Unusual codon usage (UGA for Tryptophan) was observed in both mitovirus and host mitochondrial sequences.
Conclusions:
- The discovery of mitoviruses in E. muscae expands the known host range of these viruses to phylogenetically basal fungi.
- This finding has implications for understanding the evolutionary history and distribution of mitoviruses.
- The codon usage patterns suggest specific mitochondrial adaptations in E. muscae.
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