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FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization.

Youssef Darzi1, Yuta Yamate1, Takuji Yamada1

  • 1Department of Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan.

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Summary
This summary is machine-generated.

FuncTree2 visualizes omics data using interactive radial trees, enhancing functional annotation analysis. This user-friendly web application aids scientists in gaining deeper biological insights from hierarchical classifications.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Systems Biology

Background:

  • Omics workflows extensively use functional annotations for biological insight.
  • Existing tools lack user-friendly features for hierarchical classification analysis.

Purpose of the Study:

  • Introduce FuncTree2, a web application for visualizing hierarchical functional annotations.
  • Enable researchers to leverage hierarchical data for deeper biological insights.

Main Methods:

  • Developed FuncTree2 as an interactive, customizable radial tree visualization tool.
  • Implemented features for multi-sample data mapping and navigation (zooming, panning, re-rooting, collapsing).

Main Results:

  • FuncTree2 transforms hierarchical classifications into interactive radial trees.
  • Allows simultaneous data visualization across all hierarchical levels.

Conclusions:

  • FuncTree2 provides a user-friendly platform for advanced omics data exploration.
  • Facilitates novel insights through interactive visualization of functional hierarchies.