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Updated: Jan 26, 2026

Fecal Microbiota Transplantation via Colonoscopy for Recurrent C. difficile Infection
Published on: December 8, 2014
Efficacy of Fecal Microbiota Transplantation for Clostridium difficile Infection in Children
Maribeth R Nicholson1, Paul D Mitchell2, Erin Alexander3
1Vanderbilt University Medical Center, Nashville, Tennessee.
Insights
Fecal microbiota transplantation (FMT) is effective for treating Clostridium difficile infection (CDI) in children and young adults. Key factors for success include fresh stool, colonoscopy, and fewer prior CDI episodes.
Area of Science:
- Gastroenterology
- Microbiology
- Pediatric Medicine
Background:
- Clostridium difficile infection (CDI) is a growing concern in pediatric patients.
- Fecal microbiota transplantation (FMT) is a common treatment for CDI but its efficacy in children requires further study.
- Pediatric and young adult patients are increasingly affected by CDI.
Purpose of the Study:
- To evaluate the efficacy and safety of FMT for treating CDI in pediatric and young adult patients.
- To identify factors associated with successful FMT outcomes in this population.
- To assess adverse events following FMT in children and young adults.
Main Methods:
- A multi-center retrospective cohort study involving 372 patients aged 11 months to 23 years.
- Data collected from 18 pediatric centers between February 2004 and February 2017.
- Stepwise logistic regression used to identify factors predicting successful FMT, defined as no CDI recurrence within 2 months.
Main Results:
- 81% of patients achieved successful outcomes after a single FMT, with 86.6% success after repeat FMT.
- Factors associated with successful FMT included using fresh donor stool, colonoscopic delivery, absence of a feeding tube, and fewer prior CDI episodes.
- Severe adverse events occurred in 4.7% of patients, with 10 hospitalizations.
Conclusions:
- FMT is an effective and safe treatment for CDI in children and young adults.
- Factors influencing FMT success in pediatric patients may differ from those in adults.
- Further research is needed to optimize FMT protocols for pediatric CDI treatment.
Background & Aims:
Fecal microbiota transplantation (FMT) is commonly used to treat Clostridium difficile infection (CDI). CDI is an increasing cause of diarrheal illness in pediatric patients, but the effects of FMT have not been well studied in children. We performed a multi-center retrospective cohort study of pediatric and young adult patients to evaluate the efficacy, safety, and factors associated with a successful FMT for the treatment of CDI.
Methods:
We performed a retrospective study of 372 patients, 11 months to 23 years old, who underwent FMT at 18 pediatric centers, from February 1, 2004, to February 28, 2017; 2-month outcome data were available from 335 patients. Successful FMT was defined as no recurrence of CDI in the 2 months following FMT. We performed stepwise logistic regression to identify factors associated with successful FMT.
Results:
Of 335 patients who underwent FMT and were followed for 2 months or more, 271 (81%) had a successful outcome following a single FMT and 86.6% had a successful outcome following a first or repeated FMT. Patients who received FMT with fresh donor stool (odds ratio [OR], 2.66; 95% CI, 1.39-5.08), underwent FMT via colonoscopy (OR, 2.41; 95% CI, 1.26-4.61), did not have a feeding tube (OR, 2.08; 95% CI, 1.05-4.11), or had 1 less episode of CDI before FMT (OR, 1.20; 95% CI, 1.04-1.39) had increased odds for successful FMT. Seventeen patients (4.7%) had a severe adverse event during the 3-month follow-up period, including 10 hospitalizations.
Conclusions:
Based on the findings from a large multi-center retrospective cohort, FMT is effective and safe for the treatment of CDI in children and young adults. Further studies are required to optimize the timing and method of FMT for pediatric patients-factors associated with success differ from those of adult patients.
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